barSeed - Barley Seed Development Database

Probe CUST_41841_PI390587928

Source Contig U35_1146

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41841_PI390587928	Hv_44K_v2	TTCACAAATTTGTATCTGATTCTCCTAAGCTGTCCTAGAGGGCTGTTACCGCACCTGACT	2383	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370602	4040	2e-24	3928 - 3987	100	60 / 60	plus	ABC03677 ABC17513 ABC44273
MLOC	MLOC_78372.2	1505	2e-24	1076 - 1135	100	60 / 60	plus	ABC03677 ABC44273
MLOC	MLOC_78372.1	1263	2e-24	834 - 893	100	60 / 60	plus	ABC03677 ABC44273
JLOC1	JLOC1_52232.1	1050	8e-25	833 - 892	100	60 / 60	plus
Harvest21	ABC03677	2496	3e-25	2384 - 2443	100	60 / 60	plus	ABC03677
Harvest35	U35_1146	2513	3e-25	2384 - 2443	100	60 / 60	plus

Contig Sequence (2513 bp)

>U35_1146 2513 Hv_44K_v2
TGATCAGTGGTTCAAGTTTGATGATGAGCGTGTAACAAAAGAAGATGCAAAGAGAGCATT
GGAAGAGCAATATGGTGGTGAGGAGGAGCTACCCCAGACCAATCCTGGCTTAAACAACAC
TCCGTTCAAGTTTACCAAATATTCAAACGCATACATGCTTGTATACATTCGTGAAAGCGA
CAAGGATAAAATAATTTGTAATGTGGATGAGAAGGACATAGCTGAGCACCTTCGAATTAG
ACTAGAAAAGGACCGTGAAGAGAAGGAGCGCCGGAAAAAGGAGAAAGCTGAGGCCCACCT
ATATACCATCATTAAGGTTGCTAGGGATGACGACTTGACTGCTCAGATTGGGAAAGATAT
ATATTTTGATCTTGTTGATCATGATAAAGTCCCGAGCTTCCGTATTCAAAAGCAGATGCC
TTTTACTCAATTCAAGGAGGAGGTAGCAAAAGAATTGGGCATTCCAACACAGTTTCAACG
TTTTTGGTTGTGGGCCAAGCGGCAAAACCATACGTACCGACCCAATCGACCGTTGACTCC
TCAAGAAGAAGCACTCACTGTTGGACAACTAAAGGAAGCAGCAAACAAGGCCCACAACGC
AGAACTGAAGTTGTTCTTGGAAGTTGAACTTGGACTGGACCTAAAACCTCTTGCTCTACC
AGACAAGACCAGAGATGATATTTTGCTTTTCTTCAAACTCTATGATCCTGAAAAGGAACA
GTTGCGGTATGTTGGTAGGCTCTTTGTGAAGGCTTCAGGAAGACCACAGGATATTCTGCC
AAAATTGAGAAAAATGGCTGGTTTTTTGCAGGATGATGATGTTGAGCTTTATGAGGAAAT
TAAGTTCGAGCCAAATGTGATGTGTGAGTACATTGATAATAGAATTATATTCCGGTCTTG
CCAGCTGGAAGATGGTGATATTGTTTGTTTTCAAAAATCCCCAAAGCCAGATACTTCTGA
CCAATTTAGATACCCTGATGTCCCATCGTTTCTGGTGTATATACGTAACAGACAGGTTGT
CCACTTCCGGTCGTTGGAGAAGCCCAAGGAGGATGACTTTTGCCTAGAGATGTCAAAGAT
TTTCACGTACGATGAAGTTGTAGAAAAAGTCGCTCAACAGCTTGGTGTTGATGACCCATC
AAAAATTCGTCTTACATCACATAATTGTTACTCTCAACAGCCTAAGCCTCAACCAATTAA
GTACAGAGGCGTTGAACGTTTGCTAGATATGCTGATTCATTATAATCAGACTTCTGATAT
TCTGTACTATGAAGTATTGGATATACCCCTGCCAGAACTACAGGCATTGAAGACATTAAA
AGTTACATATCATCATGCCACCAAGGATGAGGTGTCTGTTCACAGTATAAGATTGCCAAA
AAATAGCACGGTTGGTGATGTTTTAAGCGATATCAAATCAAAGGTTGACCTGTCCCATCC
TGATGCTGAACTTAGATTGCTTGAAGTATTCTACCACAAGATATACAAGATTTTTGCACC
CAGTGAAAAGATAGAAAACATCAACGATCAGTACTGGACACTACGTGCAGAGGAGGTACC
AGAGGAGGAGAAAAACCTTGGTCCTTTTGATCGCTTGATTCATGTATACCATTTTACCAA
AGACACTCAAAACCAAACGCAAGTTCAGAATTTTGGAGAACCTTTCTTTATGGTTATTCG
TGAGGATGAGACCTTATCTTCTATCAAAGAACGTTTACAGAAAAAGCTTAAGGTCTCAGA
AGAGGATTTCTCCAAGTGGAAATTTGCATACATATCCCTTGGCCGGCCAGACTATTTTGA
AGATTCTGATAGTGTAGCTACGAGATTTCAGAGAAACATGTATGGAGCTTGGGAGCAGTA
TCTTGGACTGGAGCACCCAGACACAGCGCCAAGAAAGGCACATAGTGCTAACCAGAACCG
CCATTCGTTTGAGAGGCCTGTAAAGATCTACAACTAGACAGTTGTGAGAAGCAGGAGTGA
TATCCTGCCACGCAATACCACCAAGCAAGTGGCTGAAACTGAAATTGCTGGCTTGAATAA
ATCGTGTACCATATGATGGCAGGACTGGTTGCTCAAGTTAATGACGGAGCCTGTAAGCTA
GCTTTTCCCCGCACTCTGCCCTGGATATATAAAGTTTTTGCAGAGATGACCCAACGAACC
ATCACCTTCTAGTAGATGAGGAGGCTGTTTTTCTTTTCTTCCACTAGGTGCTCTATACAG
TCAACTAGCTAGTGGATTGCTTGGTTCTGCAGTTGTTGCTAGGTGCAGAGTTGTTGATGA
TGCTTTTTTTCTGTATATTATTGTTGTGAGCTGTACAAGTGCAGTCGTTGTTGATGGTCA
TACGGTATCTGTAACTCCAGTGATGATATAGTGGCTGCGTCTTTTCACAAATTTGTATCT
GATTCTCCTAAGCTGTCCTAGAGGGCTGTTACCGCACCTGACTCGAAGTTTGGGCTTCCT
TACCCTCTGCTCTTCAAAAGTATGCTAATATGTTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_1146 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os07g06950.1	999	protein\|ubiquitin carboxyl-terminal hydrolase, putative, expressed
Brachypodium v1_2	Bradi1g56780.1	1123
Arabidopsis v10	AT3G11910.1	1115	\| Symbols: UBP13 \| ubiquitin-specific protease 13 \| chr3:3761758-3770290 REVERSE LENGTH=1115