- Probe CUST_41579_PI390587928
- Source Contig U35_37193
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_41579_PI390587928 | Hv_44K_v2 | TTCACAGTACTGTAGAACAACGTCATGGAGCTGTACAATAACTTATTGTGTTATGTAAAC | 504 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_46462.1 | 282 | 3e-22 | 4 - 62 | 98 | 58 / 59 | minus | ABC04556 ABC04557 ABC04559 ABC04560 ABC16638 ABC38793 |
| MLOC | MLOC_30589.1 | 194 | 9e-22 | 108 - 165 | 98 | 57 / 58 | plus | ABC04556 ABC04557 ABC04559 ABC04560 ABC16638 ABC38793 |
| JLOC1 | JLOC1_6094.6 | 2250 | 8e-25 | 2109 - 2168 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_6094.5 | 1948 | 8e-25 | 1807 - 1866 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_6094.4 | 2648 | 8e-25 | 2507 - 2566 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_6094.3 | 1726 | 8e-25 | 1585 - 1644 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_6094.2 | 625 | 8e-25 | 484 - 543 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_6094.1 | 833 | 8e-25 | 692 - 751 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC16638 | 656 | 3e-25 | 595 - 654 | 100 | 60 / 60 | plus | ABC16638 |
| Harvest21 | ABC04560 | 1523 | 3e-25 | 1402 - 1461 | 100 | 60 / 60 | plus | ABC04560 |
| Harvest21 | ABC04559 | 1363 | 3e-25 | 1242 - 1301 | 100 | 60 / 60 | plus | ABC04559 |
| Harvest35 | U35_48313 | 661 | 3e-25 | 8 - 67 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_37193 | 567 | 3e-25 | 505 - 564 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_365 | 1523 | 3e-25 | 1402 - 1461 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_173 | 892 | 3e-25 | 771 - 830 | 100 | 60 / 60 | plus |
Contig Sequence (567 bp)
>U35_37193 567 Hv_44K_v2 GTGACATTTCCCATAGGCAGTACTATGCCCGTTTGATTAAAGCGCTTGTCATACTAGATT ATATTGTATTTTGGTATCAGCTATTCAGGACTATAATAACCCATATGACTTGTTACAAGT TAGCCAGTGAATTTCTAAAATCCGCTTGTTGTATTAGGATAGCTTCAACACCCTTTCAAT AAATGCAGAATGCTTTACCTCTTCTCAGCCAAATTGACCATGTGGCATATTCTTTTTTTC TCTATTGCAGATTCTTTACCATTTCCACCGTAATATTTCATTTGTACTATGCACATCTGC TGAAGATTGATGAGGAAGACTTTGGAGGCCATGCCGCCCTAATTCAGGAGGGGCTCTTTG CCTCGTTCACCCTTTTCCTGCTTTCATGGACTCTAGTATACAACTTGGCTCACTTTTGAG AAGCCCGTCTGTAGATCTATGATGCTGGATTTTCGTAGTTCATTTCATTCACTCTTTTGT ACAATTAGCTATCATGGATGTAATTTCACAGTACTGTAGAACAACGTCATGGAGCTGTAC AATAACTTATTGTGTTATGTAAACATG
Homology of Contig U35_37193 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |