barSeed - Barley Seed Development Database

Probe CUST_41524_PI390587928

Source Contig U35_709

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41524_PI390587928	Hv_44K_v2	CACAAGAATGTTGAATTGCTTTGAGTTTTTGGTACAATCTAAGACGCAGTGAAATCTACC	531	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355851	684	2e-24	556 - 615	100	60 / 60	plus	ABC00541 ABC35287 ABC39392
MLOC	MLOC_76432.1	1320	2e-24	176 - 235	100	60 / 60	minus	ABC00541 ABC35287
MLOC	MLOC_76432.2	935	2e-24	128 - 187	100	60 / 60	minus	ABC00541 ABC35287
JLOC1	JLOC1_50969.1	1301	8e-25	156 - 215	100	60 / 60	minus
Harvest21	ABC00739	567	3e-25	474 - 533	100	60 / 60	plus
Harvest21	ABC00541	996	3e-25	858 - 917	100	60 / 60	plus	ABC00541
Harvest35	U35_709	658	3e-25	532 - 591	100	60 / 60	plus

Contig Sequence (658 bp)

>U35_709 658 Hv_44K_v2
TCGAGCACTGTTGGCCTATTCGTTCCCCATTCGACTCCTGCCCGCCGCCGCCCCCGCCGC
CTCTACCTCGCCGCTCCCGCCGCCGCACCGCCTCCGTCAGCCATGGCGCCGAAGAAGGAG
AAGGCCCCGGCGGCGTCGTCCAAGCCGGCCAAGTCCGGCGGCGGGAAGCAGAAGAAGAAG
AAGTGGAGCAAGGGAAAGCAAAAGGAGAAGGTGAACAACGCGGTGCTCTTCGACCAGGCC
ACCTACGACAAGCTGCTCACCGAGGTGCCCAAGTACAAGCAGATCACGCCATCCGTCCTC
TCCGAGCGACTCAGGATCAACGGGTCTCTGGCTCGCAGGGCTATCAAGGACCTGATGGAG
AGGGGGCTCATCAGGATGGTGTCAATCCACTCCAGCCAGCAGATCTTCACCAGGGCCACA
AACACCTGATTTACCTCCTGTGTTACCTGCCTGTTTTCTAGTCCAGTAGACTGAGATGTT
GCTGTTATATTGACGTTCATTATGTTCAGCGAGGCACTTTGGCACTTGTGCCACAAGAAT
GTTGAATTGCTTTGAGTTTTTGGTACAATCTAAGACGCAGTGAAATCTACCTTATATTAT
CAAAAAAAAAAAAAAAAATGCTGTCTGTATTTGTTGCTGTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_709 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None