barSeed - Barley Seed Development Database

Probe ABC35287

Source Contig ABC35287

barSeed

Links

Affymetrix Source Sequence (560 bp)

>ABC35287 560
GTCTTCCTCGCCGCCGCGCCACCTTGTTAGCCATGGCGCCGAATATTTCAAGGCCCCTGC
GGCTTCGTCGAAGCCGGCAAAGTCGGGCGGAGGGAAGCAGAAGAAGAAGAAGTGGAGCAA
GGGAAAACATATTGAGAAGGTGAACAACGCGGTGCTCTTCGACCAGGCCACTTACTTCAA
TCNTTTCACCGAGGTGCCTATTTACAAGCAGATCACGCCATCCGTCCTCTCCGAGCGACT
CAGGATCAATGGCTCTCTGGCTCGCAGGGCTATCAAGGACCTGATGGAGAGGGGGCTCAT
TAGGATGGTGTCTATCCACTCCAGCCAGCAGATCTTCACCAGGGCCACAAACACCTGATT
TATCATTATCATGTGTTCTATGGCTGTGTTCTCTAGTCCAGTAGACTGAGGTGTTGCTGT
TATATTCAAGTTCACTATGTCCAGGGAGGCACTTGTGCCACCAGTAATGTTGAATTGCTT
TTGAGTTTTGGTACACTTTATGATCGTTTTGTCAGCGCAATGAAATCTACCTTNNAAAAA
AAAAAAANAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_13086.1	634	0.0	1 - 493	96	471 / 493	None	ABC00541 ABC35287 ABC39392
AK355851	684	1e-155	99 - 591	87	437 / 502	CUST_41524_PI390587928	ABC00541 ABC35287 ABC39392
MLOC_76432.1	1320	5e-75	200 - 452	87	228 / 261	CUST_41524_PI390587928	ABC00541 ABC35287
MLOC_76432.3	358	5e-75	15 - 267	87	228 / 261	None	ABC00541 ABC35287
MLOC_76432.2	935	5e-75	152 - 404	87	228 / 261	CUST_41524_PI390587928	ABC00541 ABC35287