barSeed - Barley Seed Development Database

Probe CUST_41520_PI390587928

Source Contig U35_710

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41520_PI390587928	Hv_44K_v2	CACGCGCGCGTCAGCAACGAGTAAATAAATGGATGAAAGTCTTCTCATTTATCCAAAAAA	1147	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.986	1.847	1.368	1.238	0.503	0.651
Raw	14.408	46.533	27.650	39.140	4.685	7.465

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367914	1340	9e-22	1158 - 1212	100	55 / 55	plus	ABC02517 ABC02518 ABC04173 ABC04174 ABC07001 ABC16814
MLOC	MLOC_35512.1	1178	9e-22	818 - 872	100	55 / 55	plus	ABC02517 ABC02518 ABC04173 ABC04174 ABC07001
JLOC1	JLOC1_22912.1	1164	5e-22	819 - 873	100	55 / 55	plus
Harvest21	ABC04173	391	3e-25	12 - 71	100	60 / 60	minus	ABC04173
Harvest35	U35_710	1218	3e-25	1148 - 1207	100	60 / 60	plus

Contig Sequence (1218 bp)

>U35_710 1218 Hv_44K_v2
AACAAACCATGTCGGCACGGAGAGCTCCTCCGAGTCTAGGTCTAGCCATGGCGGCGACGG
CTATCCTGGCCGTTCTTGCCGCGGCTCTCGCCACGACCGCTCGCGCCCAGACCTGCGGCG
CGCAGGCCGGCGGCGCGAAGTGCCCTAACTGCCTCTGCTGCAGCCGTTTCGGGTTCTGCG
GCAGCACCTCTGAGTGGTGCGGCGCCGGCTGCCAGAGCCAGTGCAGCGGCTGCCCCACTC
CTCCCGGTCCCGGCGGCCAGGGCGTGGCGTCCATCCTGTCCAAGGACCTCTTCGAGCGGC
TCCTGCTCCACCGCAACGACGCGGCGTGCCTGGCCCGCGGGTTCTACACCTACGAGGCGT
TCCTCGCCGCGGCCGCCGCGTTCCCGGCCTTCGCCGGCACGTCCGAGGGGCTGAGCGTCG
AGACGCGGAAGCGGGAGGTGGCCGCGTTCCTGGGCCAGACCTCCCACGAGACCACCGGCG
GGTGGTCGACCGCGCCCGACGGCCCCTTCTCCTGGGGCTACTGCTTCAAGCAGGAGCGCG
ACCCGCCGTCAGACTACTGCGAGCCGAGGCCGGAGTGGCCGTGCGCGCCGGGCAGGCGAT
ACTACGGCCGCGGCCCCATGCAGCTCTCCTTCAACTACAACTACGGCCCGGCGGGGCGCG
CTCTCGGCGTCGACCTGCTGAGCAACCCGGACCTGGTGGCCACGGACCCGGTGCTGTCGT
TCAAGACGGCGCTGTGGTTCTGGATGACCCCGCAGGCGAACAAGCCGTCGTCGCACGCGG
TGATCGCGGGGCGGTGGACGCCGACGGCCGCGGACAACGCGGCCGGCCGGGTGCCCGGGT
ACGGCGTGATCACCAACATCATCAACGGCGGGCTGGAGTGCGGGCGTGGGCAGGACCCCC
GGGTGGTCGACCGCATCGGCTTCTACAAGCGCTACTGCGACGTCCTCGGCGTCGGCTACG
GAAGCAACCTCGACTGCAACAACCAGAGGCCGTTCACCAGCGGCGCCTCGGCTGGGCTCG
CGGAGCAGTGAAAACCATCAGCGTCTACGTACTGTGAGCTTGTGATTCGTGTATGTGTGT
GATAGGAGGAGTTCTCCACTGTGTGATGAGCTAATGGCGTGAGCGTCTTGCCTCGACCCG
TTCAAAGCACGCGCGCGTCAGCAACGAGTAAATAAATGGATGAAAGTCTTCTCATTTATC
CAAAAAAAAAAAAAAAAA

Homology of Contig U35_710 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g33130.1	341	1e-160	protein\|CHIT17 - Chitinase family protein precursor, expressed
Brachypodium v1_2	Bradi1g29887.1	321	2e-148
Arabidopsis v10	AT3G12500.1	335	3e-137	\| Symbols: ATHCHIB, PR3, PR-3, CHI-B, B-CHI, HCHIB \| basic chitinase \| chr3:3962501-3963984 REVERSE LENGTH=335