barSeed - Barley Seed Development Database

Probe CUST_41499_PI390587928

Source Contig U35_721

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41499_PI390587928	Hv_44K_v2	GTATCACGAGTTGTACGTGACTACGTGTTCTCAGATTTTATTTTAGGCATGAAAAGCTCT	907	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370416	1149	2e-23	841 - 898	100	58 / 58	plus	ABC00125 ABC00228 ABC37743
MLOC	MLOC_29490.1	839	9e-22	337 - 394	98	57 / 58	minus	ABC00125 ABC00228 ABC37743
JLOC1	JLOC1_19629.1	811	5e-22	307 - 364	98	57 / 58	minus
Harvest21	ABC00125	990	4e-24	908 - 965	100	58 / 58	plus	ABC00125
Harvest35	U35_721	967	3e-25	908 - 967	100	60 / 60	plus

Contig Sequence (967 bp)

>U35_721 967 Hv_44K_v2
CCGGAACGGAAAACACCAAACCTACTTTCCCCCTATAAAATCAGCCCCTCCTCACCCCCC
AATACAACAGCAGCAAACCAAATACCCCAATACCAAAAAAGGCCCCAGCAACTCGGGCGC
GTCGACTCCTCCATCCAGAGTTGAATCTGAGTTTACTTCGCGAGATTTGATTCAACCAGT
CGAGATGGCGCAGGCGATCGAGGCTCAGAGGGAGGGCGCGGAGGTGTACCACGGCGCGGC
GCTGTGCGCGGAGAAGGCGGTGGAGCTGCTGGCCGAGACCAACATGCCGCTGGGCCTGCT
GCCGCTGGCGGACATGGAGGAGGTGGGCTACAACCGCGCCACCGGCTTCGTCTGGCTGCG
CCAGAAGAAGGCGCTCACGCACACCTTCAAGCAGATCGGGCGGCAGGTCTCGTACGCCAC
CGAGGTGACGGCCTTCGTCGAGGACCGCAAGATGAAGCGCATGACCGGGGTCAAGAGCAA
GGAGCTCCTCATCTGGATCACGCTCTGCGACATGTTCATCGACAAGGACGACCCCTCCAA
GATCACCTTCAAGACGCCCACCGGGCTCGGGAGGACCTTCCCCGTCTCCGCCTTCGAGAA
GAAGGACGACGCCAAGGCTACGGCCGCAGCTGCCGGCGGCAAGGAGGCCGTCGTTGCCAA
GTAAGTCAGGACGGCCGGCATACTCTACAAAGTTTGGATTGGATGAAGAGTTCTCGAGTC
CAATGTTAACCACGACGATTACTATCTTCTATAATCTGTTTTTACCAGTAATAAACTACG
TACTCCTATATAAGGTCGCAGTACTCTGCTCCGGTGTTTTGCCGAGGGTTGTATCATTCA
TATGATGTTTATATAGTTTTATTATCTGCTCAAAAAAAAAAAAAAAAATGTGAACCTTTT
TGTGACAGTATCACGAGTTGTACGTGACTACGTGTTCTCAGATTTTATTTTAGGCATGAA
AAGCTCT

Homology of Contig U35_721 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g11240.1	168	6e-77	protein\|DUF538 domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g06740.1	165	2e-80
Arabidopsis v10	None