barSeed - Barley Seed Development Database

Probe CUST_41301_PI390587928

Source Contig U35_996

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41301_PI390587928	Hv_44K_v2	GGCAACGCGCGCCTTTCATGATCTAGTATGTTTTGTAACCTGTGCAAATATCAGAAAAAA	584	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7663.1	229	3e-21	44 - 100	98	56 / 57	minus	ABC03063 ABC03070 ABC03074 ABC32612
JLOC1	JLOC1_19743.1	391	6e-21	21 - 79	97	57 / 59	minus
Harvest21	ABC03063	663	3e-25	585 - 644	100	60 / 60	plus	ABC03063
Harvest21	ABC03074	730	6e-22	642 - 701	97	58 / 60	plus	ABC03074
Harvest35	U35_996	663	3e-25	585 - 644	100	60 / 60	plus
Harvest35	U35_1005	730	6e-22	642 - 701	97	58 / 60	plus

Contig Sequence (663 bp)

>U35_996 663 Hv_44K_v2
GTGCCTCTTCCCTGGGCGCCACTCTCCCGCTGCTCCTCTGACCCAAGTGCCGACAAAATG
GGCTCGCCAAGGCACACTTCATGGACGAGGAGGACCACCCACGACGATGAACATGTGTGA
CCTCACCCCCGAGCCTGACGAGCTCGACAACGACAACATCGTCAACCTTGATCCTCAACA
ACAACGACAAGCACGACGGCCTTGACGAAGTTGTCCGCCGCCGACACCGAAGAGCAAGCC
CGCCTTCTCCAGACTTGCATGACGGGAGGGGAGGGGGCGGCCACTGCCTCCTTCACACAC
CAAGCCGCTGACACCGAAGAGCAAGCCCGCCTTCTCCAGAGTTTGCAAAGGAGCTTTACG
TTCAGGGCATGGTTGTTTGCAGAGAGTGGCGGACACTACTTTGATCCTTTGACAGATAGT
TCTTTATAATGTGATAGTGTATAGGCCTTCTTCCTGGGGACCTACTGCTCAACTACTGCA
CTCCTTGGCTGCTACTGACCAAAATTTTTACAAAAAAAAAAAAATGTTTTGTTTCTATAT
ATTTACAAATATCCTATCAATCCATTTTTAAAATGGATGGGCGTGGCAACGCGCGCCTTT
CATGATCTAGTATGTTTTGTAACCTGTGCAAATATCAGAAAAAAATACATAATATTCATA
CTA

Homology of Contig U35_996 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None