barSeed - Barley Seed Development Database

Probe CUST_41277_PI390587928

Source Contig U35_28824

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41277_PI390587928	Hv_44K_v2	AAGAAAGAATCCTAGTGTATGAGTTCATGCAAAATGGTTCCTTGGATCGTTACATATGTG	623	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356929	1775	2e-24	945 - 1004	100	60 / 60	plus	ABC13498 ABC13499
MLOC	MLOC_13260.1	1136	2e-24	200 - 259	100	60 / 60	minus	None
MLOC	MLOC_13260.2	1347	2e-24	161 - 220	100	60 / 60	minus	None
MLOC	MLOC_13260.4	1355	2e-24	57 - 116	100	60 / 60	minus	None
MLOC	MLOC_13260.3	1350	2e-24	161 - 220	100	60 / 60	minus	None
JLOC1	JLOC1_8953.2	1069	8e-25	774 - 833	100	60 / 60	plus
JLOC1	JLOC1_8953.1	1072	8e-25	777 - 836	100	60 / 60	plus
Harvest21	ABC27904	683	3e-25	624 - 683	100	60 / 60	plus
Harvest35	U35_28824	683	3e-25	624 - 683	100	60 / 60	plus

Contig Sequence (683 bp)

>U35_28824 683 Hv_44K_v2
GTTACCAAAATACGTTGTCCAGGCGAGCTACAGAACTTCTCAATGTTCAAGAACAGCCAT
TTGTGGGTAAGTAGTTACTTATACGAATTTCCTAGTGCGTTTAAGCATATGACTCGGACA
TGGAAACTAATAGAATGAAGTTTCCATGACAATCTTATTTGCTTCAAATTTCCTAAAGGG
AGTGGATGATCGTTGCAGCAGACAAATTGGAGCATGCGCTCTATAATTTTGTATTCTCTT
AGCCATGCCTATGTTTCTTTGCAACCCCAATGGTGACAACTGACACGGATATCTTATCCA
TGAGTCAGGAAAAGTGGACCTGCAAGAACAGAAAATGTCCAACATTGAAGAGCTTGCAGA
GCTCTGTGCCCATATAGAAGCGGCTTGCACGGGATTTGTAAAGTTCAACTTCTTTCAGAT
CGTGGATGCTACAAACAATTTCTCAGAAAAAGGAATAATTGGGCGCGGTGGATTTGGTAC
GGTTTACAAGTGTCAGTTGTCCGATGGAATTACGGCTGCCATCAAGAGAGCTGCTGAGCA
TGCAACAGTCAGCAGTGAATTGCAGCTTGCGAAGCTTCATCATACTAATCTGATTAGGCT
ACTTGGGTGGTGCATCCATGGGAAAGAAAGAATCCTAGTGTATGAGTTCATGCAAAATGG
TTCCTTGGATCGTTACATATGTG

Homology of Contig U35_28824 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g33457.1	515	3e-51
Arabidopsis v10	None