barSeed - Barley Seed Development Database

Probe CUST_41269_PI390587928

Source Contig U35_16853

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41269_PI390587928	Hv_44K_v2	TGATGAAGGATTCATTGACAGCTTTGACATTATTGTAGTTAGCTGCACATCTCTTAAAAC	535	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250954.1	2067	2e-24	872 - 931	100	60 / 60	plus	ABC06881 ABC06882 ABC44644
MLOC	MLOC_58313.2	737	2e-24	187 - 246	100	60 / 60	minus	ABC06881
MLOC	MLOC_58313.1	1001	2e-24	124 - 183	100	60 / 60	minus	ABC06881
JLOC1	JLOC1_37875.1	839	8e-25	537 - 596	100	60 / 60	plus
Harvest21	ABC06880	751	3e-25	518 - 577	100	60 / 60	plus
Harvest35	U35_16853	769	3e-25	536 - 595	100	60 / 60	plus

Contig Sequence (769 bp)

>U35_16853 769 Hv_44K_v2
ACTGGACTCGTTTCGTTCCGTTCCCTTCCCCCGGAACCAAACCTCGCTCGCTTCGTCCCC
CAATCCCCTCCTATCTAGCGCGGCGAGCCGGCGGCGACGAACGGAGCCGGCGGCAGGCAG
GCAGGCAAGCAGCGGAGCCGGCCACCAGGCTCAGGATCCAGGTGTTCCGTGCGATGGGTG
GCGGCGGAGGCACAGAGGAGGAGTTGACAGCACAGGAGACAGCTCTCTATGACCGCCAGA
TCCGTGTCTGGGGCGTTGATGCTCAGAAGAGGCTAAGTAAAGCGCACGTGCTTGTGTGTG
GCGTGAATGGTACAACTATTGAGTTCTGCAAGAATATTGTTCTAGCAGGAGTTGGCAGTT
TATCCTTGATGGATGATCACATAGTCACTGAGGATGATCTCAGTGCAAACTTCCTAATTC
CTCATGATGAGAGTATGCATGGTGGTTGCTCACGAGCTGAGGCTTGCTGTGAGTCCTTGA
AAGATTTTAATCCAATGGTCCGAGTTGCTGTTGCAAAAGGTGATCCATCAGTAATTGATG
AAGGATTCATTGACAGCTTTGACATTATTGTAGTTAGCTGCACATCTCTTAAAACAAAGT
TGTTTATTAATGACAACTGCCGGAAGAGAAGCAAGCGTATTGCCTTTTACTCTGTAGAGT
GCAAGGATTCTTGTGGTGAAATATTTGTTGATTTGCAGAACCATAGTTATCTTCAGAAGA
AGCCTGGAGGAGAACCTGAACAGCANGAGTTGACATATGCTAGCCTGCA

Homology of Contig U35_16853 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g30410.3	256	6e-106	protein\|ThiF family domain containing protein, putative, expressed
Brachypodium v1_2	Bradi4g18870.5	232	8e-112
Arabidopsis v10	AT4G24940.1	322	2e-68	\| Symbols: SAE1A, AT-SAE1-1, ATSAE1A \| SUMO-activating enzyme 1A \| chr4:12823651-12825971 FORWARD LENGTH=322