barSeed - Barley Seed Development Database

Probe CUST_41107_PI390587928

Source Contig U35_46701

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41107_PI390587928	Hv_44K_v2	TATTCAGTATATATATCCAGTTCACTGCCCTCCCCAGCCTTTCATGGTGAATCTTCTAGC	179	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61636.1	1198	2e-24	153 - 212	100	60 / 60	plus	ABC02537 ABC15661 ABC47157
MLOC	MLOC_61636.2	1118	2e-24	145 - 204	100	60 / 60	plus	ABC02537 ABC15661 ABC47157
MLOC	AK362005	3522	7e-23	3289 - 3348	98	59 / 60	minus	ABC02537 ABC47157
MLOC	AK360609	987	7e-23	830 - 889	98	59 / 60	minus	ABC02536 ABC02537 ABC15661 ABC47157
JLOC1	JLOC1_40280.1	1394	8e-25	924 - 983	100	60 / 60	minus
Harvest21	ABC47157	543	3e-25	180 - 239	100	60 / 60	plus	ABC47157
Harvest21	ABC02537	1208	3e-25	809 - 868	100	60 / 60	minus	ABC02537
Harvest21	ABC02538	1037	1e-23	807 - 866	98	59 / 60	minus
Harvest35	U35_46701	543	3e-25	180 - 239	100	60 / 60	plus
Harvest35	U35_14915	1210	1e-23	811 - 870	98	59 / 60	minus

Contig Sequence (543 bp)

>U35_46701 543 Hv_44K_v2
TTTTTTTTTTTTTTTTTGAATTAACCATATTTTCATACAATTTTTGTCATCTAAGATCCA
TCAAATGCTTCTAAAACACTGACGAAGTAACGACTAATGAGATTCCATAACAAGCTCCAA
CTGTGACGGGTACATTAAACAGGGGGGAGCAACACAATTTCTGATGTAGACAAATTCTGT
ATTCAGTATATATATCCAGTTCACTGCCCTCCCCAGCCTTTCATGGTGAATCTTCTAGCC
TCCAGCCACTCAAGCAGATATCATGAGGTGAGGTGTATGGATGGAGCCTTGCTGAGCTTA
TCAGGAGCAGCAACTGCTCTGCTGCTGCTGTATGGGCTGCCCTTTCATGTGAACATGGAC
CGTCGATTCGCGCCCGTGTGCAAGTTCCTCACCCCCAACGAGGACGGCGTCTCCATGGCG
GCGCTCGCGCTCATGAACCAGGACAAGGTCCTCATGGAGAGCTGGTACTATCTGAAGGAC
GCTGTCCTTGACGGCGGCATCCCGTTCAACAAGGCGTACGGGATGTCCGCGTTCGAATAC
CAC

Homology of Contig U35_46701 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None