barSeed - Barley Seed Development Database

Probe CUST_41105_PI390587928

Source Contig U35_46702

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41105_PI390587928	Hv_44K_v2	CTTGAACGGTATGAGCGCTACTCTTATGCAGAAAAGGTTCTCGTTTCAAGTGAATCTGAA	551	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.931	0.797	0.983	1.778	1.118	1.203
Raw	73.061	99.347	106.683	306.523	68.835	79.666

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360697	1193	2e-24	345 - 404	100	60 / 60	plus	ABC07416 ABC11229 ABC49647
MLOC	MLOC_39040.1	455	2e-24	389 - 448	100	60 / 60	plus	ABC07416
JLOC1	JLOC1_25429.1	629	8e-25	391 - 450	100	60 / 60	plus
Harvest21	ABC47161	611	3e-25	552 - 611	100	60 / 60	plus
Harvest21	ABC02203	1196	3e-25	339 - 398	100	60 / 60	plus
Harvest21	ABC02195	1250	3e-25	861 - 920	100	60 / 60	minus
Harvest35	U35_46702	611	3e-25	552 - 611	100	60 / 60	plus
Harvest35	U35_694	1196	3e-25	339 - 398	100	60 / 60	plus
Harvest35	U35_687	1250	3e-25	331 - 390	100	60 / 60	plus

Contig Sequence (611 bp)

>U35_46702 611 Hv_44K_v2
TTTTTGTGGGGGGGGGGCCTTTGGAACATCACATATTAGGATATTGAGTTCAACGTTTAT
TACTACAGTTATATAATATAGTACTTATATACATTAGGTCCATAACCACACAAATACATC
AGCTCACTGCTCACATGCATACGAGATAAGACCAGAAAAGAAAAACGGGCTGGCGCCTGG
TAACTACGAGTTCGCCCTCTGTGGCAATGTCTCGAATGCAGAAACTATGTTGCTAAACTT
CATACGGTGAAGGGGCGCCCCGCTTGGCTTGATAGCGCACGCAACCTTGTCCTCGAGGGG
GCAGCGCGCCCTCAGCATGGAGAACACGTGGTTGTTCAGCCTCCTAGCCTTCCTCATCGC
TTCAAGGATGACCTCGTAGCCTTGGAAGATATTTGGGCTTTTGCCAGGTCACCTTCTCCA
AGCGCCGCTCGGGGCTGCTCAAGAAGGCGCACGAGATCTCCGTGCTCTGCGACGCCGAGG
TCGGCCTCATCATCTTCTCCACCAAGGGAAAGCTCTACGAGTTCTCCACCGAGTCATGTA
TGGACAAAATTCTTGAACGGTATGAGCGCTACTCTTATGCAGAAAAGGTTCTCGTTTCAA
GTGAATCTGAA

Homology of Contig U35_46702 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None