barSeed - Barley Seed Development Database

Probe CUST_41050_PI390587928

Source Contig U35_34748

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41050_PI390587928	Hv_44K_v2	GCCTGCTTTCTGAACTACTGATGCTAAGTGTTGTACAATGTTTTGCCGTACACAGATACA	41	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371805	2140	7e-23	2075 - 2134	98	59 / 60	plus	ABC04593 ABC07135 ABC11168 ABC15997 ABC23641
MLOC	MLOC_43400.1	1908	7e-23	1806 - 1865	98	59 / 60	plus	ABC04593 ABC07135 ABC11168 ABC15997 ABC23641
JLOC1	JLOC1_28060.1	2154	4e-23	1805 - 1864	98	59 / 60	plus
Harvest21	ABC15997	1414	6e-22	1327 - 1386	97	58 / 60	plus	ABC15997
Harvest35	U35_34748	748	3e-25	42 - 101	100	60 / 60	minus
Harvest35	U35_20935	1420	6e-22	1327 - 1386	97	58 / 60	plus

Contig Sequence (748 bp)

>U35_34748 748 Hv_44K_v2
GGCGAATTGGGCCCTTTCGAAGATGCTCGAGCGGCCGCTACTGTATCTGTGTACGGCAAA
ACATTGTACAACACTTAGCATCAGTAGTTCAGAAAGCAGGCGCCCTTGTCAGTGACCCAG
GAGAACTAATTACACATGTAAGCCAATCAGGGGTGATGGGGTTCCACCTATCTAAATTTC
CACACAAAACGACCATGAGAAAAACTAAAAGGAGCTGCTGCCTAGTGGGCCCAAATGCCT
AACTACTACATGCACAAATAAACACCATGCCTTTTACTCCACGCCCAATTTGACGGACCC
GTCCTTCACAAGCTTCATGCTAAGGCTGTTGAATCTTCCTCTCGAATGATGCCGTGATGC
CTTTCGCCAGTCCGTGCCCGTCTTCATCATCGCCACGAATTCGTCGTAGCTAATTTTGCC
ATCCTTATCGGTGTCAGCGGCCGCTGCCATGAGGATCTCGCCAAAAAACTTCAGGAAGCA
ATGGATATAAACAAAAAATCATCTTCAGGCTCAAGATCTTCTGACGGATCTTCTGGCAAG
CGAATGCGGGAGGTCGCATGCCCCATCTGCACAGTACACCTCCAGGTACAGGTCCCAGCA
TCTGGCTCAGAGACGATAGAATGCGGCGTGTGCCAGCACCCTTTCCTCGTCAGCTCTCGC
TGAACAACCGTCATGCAGAGCTCTTCCACTTTGATCTCTGTCAAGATCCTCGTGCTCATC
GATGCTGTTGCTCCAGCCAGCCATCATC

Homology of Contig U35_34748 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None