barSeed - Barley Seed Development Database

Probe CUST_405_PI415269222

Source Contig TA42698_4513

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_405_PI415269222	Hv_44K_v2	GCACTTCTGCACTTGTATATCAGTGAACTGGAAGAGACAATATACTTACTTTTTGGAAAA	1162	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59078.1	2241	9e-22	49 - 107	98	58 / 59	minus	ABC04674 ABC15844
MLOC	MLOC_59078.2	1976	3e-21	1920 - 1973	100	54 / 54	plus	ABC04674 ABC04676 ABC15844
JLOC1	JLOC1_38418.1	2861	5e-22	2066 - 2124	98	58 / 59	plus
JLOC1	JLOC1_38417.1	3501	5e-22	1168 - 1226	98	58 / 59	minus
Harvest35	U35_5528	1235	3e-25	1163 - 1222	100	60 / 60	plus

Contig Sequence (1227 bp)

>TA42698_4513 1227 Hv_44K_v2
ACAACCCCAACCTCCACCTCCGGGAGGACGACGTGGTGCTCTGCGTGCTCCCCATGTTCC
ACGTCTACTCGCTGCACTCCATCCTGCTCTGCGGGCTGCGCGCCGGCGCCGCCCTCGTCG
TCATGAAGCGCTTCGACACGGTCAAGATGATGGAGCTGGTGGAGCGCCACGGCATCACCA
TCGCGCCGCTCGTGCCGCCCATCGTCGTCGAGATGGCCAAGGGCGACGCCATGGACCGCC
ACGACCTCTCCTCCGTCCGCATGGTCATCTCCGGCGCCGCGCCCATGGGCAAGGAGCTGC
AGGACATCATCCACGCCAAGCTCCCCAATGCCGTGCTCGGACAGGGCTATGGGATGACAG
AGGCAGGTCCGGTGCTGTCGATGTGCATGGCGTTCGCCAAGGAGCCGTCGCCGGTGAAGT
CAGGCGCATGCGGCACGGTGGTAAGGAACGCGGAGCTCAAGATCGTCGACCCGGAGACCG
GGCTGTGCCTCGGGCGCAACCAGCCCGGGGAGATCTGCATCAGGGGAAGGCAGATCATGA
AGGGGTACCTCGACAACCCGGAGGCTACGGCGGAGACCGTGGACAAGGACGGGTGGCTGC
ACACCGGCGACGTCGGGTTCGTGGACGACGACGACGAGATCTTCATCGTGGACCGGCTCA
AGGAGCTCATCAAGTACAAGGGGTTCCAGGTCGCCCCCGCCGAGCTCGAGGCCATGCTCA
TCGCCCACCCCGGCATCGCCGACGCCGCCGTCGTCCCGATGAAGGATGATGCCAGCGGCG
AGGTGCCAGTGGCGTTCGTAGTGCCGTCGTCGTCGGAGGGTGCCGACATGACCGAGGACG
AGATCAAGCAGTACGTGGCGAAGCAGGTGGTGTTCTACAAGAGGCTGCAGAAGGTCTTCT
TCGTGAGCTCCATCCCCAAGGCGCCGTCCGGGAAGATCCTGAGGAAGGACCTGCGAGCAA
AGCTGGCCGCCGGAGCGTGCTGATGGTGGTTGATTATTTGTGCATGCGAAATACTACTAT
ATACTCGGTTCGTTTTTTTTGTTTTGTTCTCGTGATGCTAATTAAAATACCACGAAAAGA
GTGTGAGATCAATCAGTCGCCAATGTACAAGGCATACTGAGTGTGGGCAAGGAGTTCTGG
ATACACTCCAGATAATGTATTCGCACTTCTGCACTTGTATATCAGTGAACTGGAAGAGAC
AATATACTTACTTTTTGGAAAAAAAAG

Homology of Contig TA42698_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g34790.1	540	0.0	protein\|AMP-binding domain containing protein, expressed
Brachypodium v1_2	Bradi3g37300.1	549	0.0
Arabidopsis v10	AT1G51680.1	561	2e-154	\| Symbols: 4CL1, 4CL.1, AT4CL1 \| 4-coumarate:CoA ligase 1 \| chr1:19159007-19161464 REVERSE LENGTH=561