barSeed - Barley Seed Development Database

Probe CUST_40345_PI390587928

Source Contig U35_17842

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40345_PI390587928	Hv_44K_v2	TACCCAGTACAAAGACGGTTACAAGGAGCAGTTGCTAAACTAAAGCAACCGACATAGCAG	636	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4109.1	1858	2e-24	622 - 681	100	60 / 60	minus	ABC09498 ABC14039
MLOC	MLOC_4110.1	839	2e-24	79 - 138	100	60 / 60	minus	ABC09498 ABC14039
MLOC	MLOC_4109.2	1139	2e-24	79 - 138	100	60 / 60	minus	ABC09498 ABC14039
MLOC	AK356598	638	3e-21	541 - 601	97	59 / 61	plus	ABC13291 ABC13292
MLOC	AK368046	1174	3e-21	883 - 943	97	59 / 61	plus	ABC13291 ABC13292
JLOC1	JLOC1_2506.2	1026	8e-25	767 - 826	100	60 / 60	plus
JLOC1	JLOC1_2506.1	1318	8e-25	1059 - 1118	100	60 / 60	plus
Harvest21	ABC13292	990	8e-21	880 - 937	97	56 / 58	plus	ABC13292
Harvest35	U35_17842	788	3e-25	637 - 696	100	60 / 60	plus
Harvest35	U35_17840	1086	3e-25	921 - 980	100	60 / 60	plus

Contig Sequence (788 bp)

>U35_17842 788 Hv_44K_v2
CAGCCCAAATCCACCGCCGTGGAGGAGAGGAGGCCACAGCCGAGCGCCGACGCTAGAAGG
AGGAGCCGCGCTGGAGGGCTTCCTTCCTTCACGCGCCGGAAGGCGTCGTCGTGTCGTGCA
CCGACCGTTGTCTGCTGCCACCGATGTGTGTTAGGCGGCAAGCCGCCGCGCTTGGAGCAG
CCTGGCCGAAGGATGCAGCCACTGGTGTCGCCGTCCATCGAGGAACTTGGCCGAGGGGGC
GTCTTCTGGGCCATGGGTTGCCGTCAGAGTTTACCTTGGACAGTATTGATACGCCGCCCT
GGAGGGATGAATGTTCTTCTTTGCCATGAAGATGGAGGGGTTGTTGCCTGTCGGAGTTGC
TTTCCGATCCTTGCCGGGGATTGTACCGTTCATGGCTTGACGCTGAGGATTCCGTCGCCG
GACGACAGTCACGCGTCGGCAGTATTAACACCAGATGCGAGAGATAGCCTTAGCGCCTCG
TCGTTGTTAGGTTGTCTTCCCGTCGCTTTCTTCTTGTGTTGTGTTGGCCAAAACGCTCTC
GGATACAAGCGTGTTGGTAACTTGTGAAGAATAAAAAAGAGAGGAAGAGCAAATGATGAA
AATCGCTAACTCGTTGATTGAAGACGTGGGTATATATACCCAGTACAAAGACGGTTACAA
GGAGCAGTTGCTAAACTAAAGCAACCGACATAGCAGGNAATATCGAAGATTATCCTTTAC
AAGTCAAATTTCACCCTCATCCCCTTCTCGATGGAATTAACCGAACCAGGCCCTTAATTA
ATGTATTA

Homology of Contig U35_17842 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None