barSeed - Barley Seed Development Database

Probe CUST_40282_PI390587928

Source Contig U35_17877

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40282_PI390587928	Hv_44K_v2	TGCGGATCTCTACTCCATTTCCCCTTCTTTGACAGGATGGAAACTATAAGAGCTTCCTTC	659	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368192	867	2e-24	687 - 746	100	60 / 60	plus	ABC08336
MLOC	AK369867	2758	2e-24	1498 - 1557	100	60 / 60	plus	ABC08336 ABC13164
MLOC	MLOC_41377.1	292	2e-24	67 - 126	100	60 / 60	plus	ABC08336
JLOC1	JLOC1_26966.1	292	8e-25	67 - 126	100	60 / 60	plus
Harvest21	ABC08336	842	3e-25	627 - 686	100	60 / 60	plus	ABC08336
Harvest35	U35_17877	875	3e-25	660 - 719	100	60 / 60	plus

Contig Sequence (875 bp)

>U35_17877 875 Hv_44K_v2
ATTGACTCCACGAGAGGTTCCCGTTCCCTGGCGGATAGAGAGGGAGAGGGAGAGGGAGAG
GAAGGAGAGACCGAAGGCCGCCCGTGTTCTTACCCCGTCTCCTCTTCCGCCTTCGGCCTT
TACTGAAACTCCCATCTCAGAAACCAAGAAAAGGGGGTCTGTGAAGAGGTGTCTTGCGGC
AGAACAATGGAGGTACTTGGCAAATCTGTGATTGCTGAGCCCAGCAATGTGATTTTCTTG
TCCACTATTCTTAACACAGAAGGGCAAGTCCCCAGTCACAAGTGTGACAAGAGGTGCCAG
AATGAGCACATCTTTGGAAACATGTACCGCTGCAAACTGACTGGATTGACACACATCTGT
GACAAAAACTGTAACCAGAGGATCCTCTATGACAACCACAACTCGCTCTGCCGAGTGAGT
GGGCAGTTGTTCCCGCTCTCGCCACTGGAGCTGCAGGCTGTGAGGGGGATTCGGAGGAAG
CATGAAGCTGACAGCCATGAAGGGTGCTCCTTTAAGCGCAGGCGTGGTGCACAGCTTCAT
CCTTCCCCTTTTGAGAGGTCCTACTCCGCCGTGTCTCCGATACCGAGCCAAGCTGGAGAT
GGCATGGACCTGAGCTAGAGCTAACGAGACTTCCATCTTTTCTTTTCCCGGCTACCTTAT
GCGGATCTCTACTCCATTTCCCCTTCTTTGACAGGATGGAAACTATAAGAGCTTCCTTCT
TTGTAGACTTATGAAGGGATATGAGACTCCTTTAGAGGCACTAAATAATGTCTATGTAGT
ATAAATTCAGTTTCATGGGACCTTGTTGTAATCGTAACTTCGATTGAACAGCCTATTCTG
AATTACTTAGTGTTAATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_17877 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g36550.2	144	2e-93	protein\|CRP3 - Cysteine-rich family protein precursor, expressed
Brachypodium v1_2	Bradi3g30750.2	145	3e-95
Arabidopsis v10	AT3G49550.1	147	6e-60	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G24610.1); Has 55 Blast hits to 55 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr3:18368201-18368644 FORWARD LENGTH=147