barSeed - Barley Seed Development Database

Probe CUST_40123_PI390587928

Source Contig U35_13682

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40123_PI390587928	Hv_44K_v2	TTGTTTGCTATCTTCTGTAGGATCGAATGGAATGGAATGGAAATTGCTAGTTCATTGTTG	420	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372202	3795	2e-24	1928 - 1987	100	60 / 60	minus	ABC00009 ABC00020 ABC00026 ABC00030 ABC00035 ABC00037 ABC00059 ABC00117 ABC00122 ABC00131 ABC00139 ABC00140 ABC00142 ABC00153 ABC00159 ABC00160 ABC00163 ABC00172 ABC00173 ABC00174 ABC00175 ABC00180 ABC00197 ABC00202 ABC00203 ABC00234 ABC00250 ABC00316 ABC00434 ABC00488 ABC00499 ABC00500 ABC00576 ABC00659 ABC00665 ABC00695 ABC00700 ABC00724 ABC00877 ABC00980 ABC11710 ABC12636 ABC27134 ABC27412 ABC29158 ABC29958 ABC30604 ABC30671 ABC32179 ABC37444 ABC43349
MLOC	AK248915.1	492	2e-24	433 - 492	100	60 / 60	plus	ABC00009 ABC00020 ABC00026 ABC00030 ABC00035 ABC00037 ABC00059 ABC00117 ABC00122 ABC00131 ABC00139 ABC00140 ABC00142 ABC00153 ABC00159 ABC00160 ABC00163 ABC00172 ABC00173 ABC00174 ABC00175 ABC00180 ABC00197 ABC00202 ABC00203 ABC00234 ABC00250 ABC00316 ABC00434 ABC00488 ABC00499 ABC00500 ABC00576 ABC00659 ABC00665 ABC00695 ABC00700 ABC00724 ABC00877 ABC00980 ABC27134 ABC27412 ABC29158 ABC29958 ABC30604 ABC30671 ABC32179 ABC37444 ABC43349
MLOC	MLOC_18964.2	815	2e-24	178 - 237	100	60 / 60	plus	ABC00026 ABC00139 ABC00163 ABC00203 ABC00695 ABC00877 ABC30604 ABC32179 ABC37444
MLOC	MLOC_18964.1	615	2e-24	178 - 237	100	60 / 60	plus	ABC00026 ABC00139 ABC00163 ABC00203 ABC00695 ABC00877 ABC30604 ABC32179 ABC37444
JLOC1	JLOC1_13138.1	617	8e-25	178 - 237	100	60 / 60	plus
Harvest21	ABC34126	648	3e-25	320 - 379	100	60 / 60	plus
Harvest21	ABC00695	514	3e-25	47 - 106	100	60 / 60	minus	ABC00695
Harvest21	ABC00203	660	3e-25	550 - 609	100	60 / 60	plus	ABC00203
Harvest21	ABC32179	487	1e-23	410 - 470	98	60 / 61	plus	ABC32179
Harvest35	U35_38241	648	3e-25	320 - 379	100	60 / 60	plus
Harvest35	U35_13682	526	3e-25	421 - 480	100	60 / 60	plus

Contig Sequence (526 bp)

>U35_13682 526 Hv_44K_v2
GAGGCTCACAAAGACAACTCAACCTCACCGGAGAGAAGCGAGAAGATGTCGGGCCGCGGC
AAGGGAGGCAAGGGTCTCGGGAAGGGCGGCGCCAAGCGCCACCGGAAGGTCCTCCGCGAC
AACATCCAGGGCATCACCAAGCCGGCAATCCGTCGCCTGGCCCGGCGGGGAGGCGTGAAG
CGCATTTCGGGGCTCATCTACGAGGAGACCCGCGGCGTCCTCAAGATCTTCCTCGAGAAC
GTCATCCGCGACGCCGTCACCTACACCGAGCACGCCCGCCGCAAGACCGTCACCGCCATG
GACGTCGTCTACGCCCTCAAGCGCCAGGGACGCACCCTCTACGGGTTCGGAGGCTAGGCC
ACCAACCAGATTAGAGTGTCTAGGGTTCGTGGTCGTTGGTTTAATCGCAGCATCTCGCTG
TTGTTTGCTATCTTCTGTAGGATCGAATGGAATGGAATGGAAATTGCTAGTTCATTGTTG
AAAAAAAAAAAAAAAAATAAATTCCCCATAAAAAAAAAAAAAAAAA

Homology of Contig U35_13682 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g39410.1	104	9e-51	protein\|Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
Brachypodium v1_2	Bradi5g19360.1	104	4e-51
Arabidopsis v10	AT5G59970.1	103	5e-51	Histone superfamily protein \| chr5:24146352-24146663 REVERSE LENGTH=103