barSeed - Barley Seed Development Database

Probe CUST_39930_PI390587928

Source Contig U35_19606

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39930_PI390587928	Hv_44K_v2	GATTGTACATTGTAAGACAATTATATCAGGAGTAAAGGGAACTTTTCTTCCGCGTCAAAA	853	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.702	2.181	1.117	0.721	0.349	0.672
Raw	221.296	463.137	198.382	207.985	34.263	72.574

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69612.2	874	2e-23	471 - 528	100	58 / 58	plus	ABC13164
MLOC	AK369867	2758	3e-22	2703 - 2758	100	56 / 56	plus	ABC08336 ABC13164
MLOC	AK367437	749	3e-21	694 - 747	100	54 / 54	plus	ABC08336 ABC13164
JLOC1	JLOC1_46140.1	811	1e-23	392 - 449	100	58 / 58	plus
Harvest21	ABC13164	926	3e-25	14 - 73	100	60 / 60	minus	ABC13164
Harvest21	ABC13163	674	2e-21	619 - 674	98	55 / 56	plus
Harvest35	U35_19606	926	3e-25	854 - 913	100	60 / 60	plus

Contig Sequence (926 bp)

>U35_19606 926 Hv_44K_v2
GGTCGGTGATGTAAATCCGTTGCAGATTACTTGTTCCTATTTCTTGGGGGAGTGAACTTA
CTAACTAAATTTCCTTCTTAATTAGTGCTTTTCATGGCAGGTTGATGATCAAGTCTGAGT
TATTTATGGTTTGCTCTCATATAGCGTATTTGTTTCAGTTAAATGTTTTCTTCTTTGCAG
GTTATGTTTCTAACATCTATATAAAATATATTGCTTCCTCCTGTTTTGTTTTGACCACCT
TCTTTCCTTTACTCCTTTCTGTTTTGCAGGGTTTAACCAGGTGCTAACTTTTTTGAAAAT
ATTTTGGTCTATATGTAATGTTCCCTTTGTTAAATTGATTTTTCTTGTTCTGAGTGTTAC
CTTGTTTTTTATGTTTGTGCAGGTGAATTGGTGTTCTTTCGCTCTTCTCGGTCCATGGGA
GGCAGGAGCTATGGAAGATCATTGAAATCCTTTGCAGCAGTGGGATAGCAAGGTACCATC
AAAGTCTTAGGCGGCAGAATGCTTTTCAGTGCATTGTCCACAACAGAAATCATCAGCAGA
AGAGAGGTTTGGAACTATTCAAACAAGAGCCAGCTTGAAGCCACTGAAACTTCAAAACTC
ATACTGGAGAAGAGCCTGCAGGGGCTTGACATCGCGTTGCTGCTGCGGTAGGACAAGTCT
ACTCCAGTACCTGCCACTGCGACCCGAAGTAAACCTCTGTGGATCTAGTTGAGTATCCAC
CATCTGTGATCCAAAGCAAGATCTGTGAAGATCTCAAGAGATTTCAGTGTCCCTAATCCA
ACAAGCTTGTTCTCAACATAAACTTAATATTGCCGTGCAATTTCCTTTCCCGTTCTAAAA
GAGATTAGGCCATGATTGTACATTGTAAGACAATTATATCAGGAGTAAAGGGAACTTTTC
TTCCGCGTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_19606 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None