barSeed - Barley Seed Development Database

Probe CUST_3976_PI390587928

Source Contig U35_49332

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3976_PI390587928	Hv_44K_v2	TTCTGTGGGTGTGCCCTCGGCTTGCATGTATCTTATTAGATACAAACAACCTTTCCAAGA	160	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363686	2413	2e-24	2209 - 2268	100	60 / 60	plus	ABC04548 ABC04549 ABC04552 ABC43241
MLOC	AK369904	2451	2e-24	1007 - 1066	100	60 / 60	plus	ABC04548 ABC04552 ABC43241
MLOC	AK359575	2665	2e-24	2447 - 2506	100	60 / 60	plus	ABC04548 ABC04549 ABC04552
MLOC	AK364353	3476	2e-24	2068 - 2127	100	60 / 60	plus	ABC04548 ABC04549 ABC04552 ABC43241
MLOC	MLOC_48691.1	738	2e-24	140 - 199	100	60 / 60	plus	ABC04548
MLOC	MLOC_48692.1	848	2e-24	140 - 199	100	60 / 60	plus	None
JLOC1	JLOC1_31243.4	915	8e-25	317 - 376	100	60 / 60	plus
JLOC1	JLOC1_31243.1	920	8e-25	322 - 381	100	60 / 60	plus
Harvest21	ABC35304	674	2e-21	32 - 87	98	56 / 57	plus
Harvest35	U35_49332	469	3e-25	161 - 220	100	60 / 60	minus

Contig Sequence (469 bp)

>U35_49332 469 Hv_44K_v2
TTTTTTTTTTTTTTTGCAACTTCTCCATACATGTTATGTTTGTAAATCGATGTCAAATGA
AGAGTAGTACATTACATTGTTGAAATAATTATTGCCTCTTATGTTCAGAGCTACCGAACA
AGAGGCGATCACACTGCTTCTGAATCTTTTTCTGAGCCCATCTTGGAAAGGTTGTTTGTA
TCTAATAAGATACATGCAAGCCGAGGGCACACCCACAGAACATAATCGGGCGTGCTAGTT
TAAATTGCGCACAATGGTCGCTAGAACAGGTAGAAAATACACCAACCAGAAATTTACTTA
TGTCCAGGCTCTGAAATGGTCATTGGGGAGGACTGTGCAAACTGAGTTCGCCTAGAAGAA
AAAGACAAGTGTGGCTCACCGTTTGATCTTAAAATATCACGGACCACCACCACTATGGTG
GCCCGTTGATCCGCTGTTAATCCCTTCATATCAACCTAATTCAGTTCAG

Homology of Contig U35_49332 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None