barSeed - Barley Seed Development Database

Probe CUST_39721_PI390587928

Source Contig U35_31744

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39721_PI390587928	Hv_44K_v2	ATGTTCGCGCTGCAGCTAGCCAACTCGACGGTGCTACCGATGACGCTCAGGACAGCCATC	43	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_73307.1	1497	2e-24	148 - 207	100	60 / 60	plus	ABC02528 ABC02539 ABC05311 ABC05312 ABC05313
JLOC1	JLOC1_48798.1	1462	8e-25	113 - 172	100	60 / 60	plus
Harvest35	U35_31744	528	3e-25	44 - 103	100	60 / 60	plus

Contig Sequence (528 bp)

>U35_31744 528 Hv_44K_v2
AAGTAGCATCAGTTAGCGAGAGATGGCGGACGAGGAGGCGTGCATGTTCGCGCTGCAGCT
AGCCAACTCGACGGTGCTACCGATGACGCTCAGGACAGCCATCGAGCTGGGCCTTCTGGA
GACCCTTGTGGCCGCCGCCGGCATGTCGCTGACTCCGGAGGAGGTCGTCGCGAAGCTGCC
GTGCCGGTGCAAGGTCAACAACCCGGACGCGCCATCCATGGTGGACCGCATGCTGCGTGT
GCTTGCGTCGTACAAGGTCGTGTCGTGCGCGGTGGAGGAGGGCAAGGACGGCAGCCTCTC
TCGCCGCTACGCCGCGGAACCGGTGTGCAGGTGGCTCGCCCCGAACGAGGACGGCGTCTC
CATGGCCCCCTTCGCTCTCCTCGCCCAGGACCACGTCTACCTCGAGCCCTGGCGCCACCT
CAAGGATGCGGTCCTCGACGGCGGCGGCGGCACTGCGTTCCACAGGGCGTACGGGACGTC
GTGGTACGACTACACCGGCAGGGACGCGCGCTTCAACGGCCTCTTCTA

Homology of Contig U35_31744 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g06100.1	369	2e-63	protein\|O-methyltransferase, putative, expressed
Brachypodium v1_2	Bradi3g16530.1	361	3e-71
Arabidopsis v10	None