barSeed - Barley Seed Development Database

Probe CUST_39601_PI390587928

Source Contig U35_21458

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39601_PI390587928	Hv_44K_v2	CAAGAAAACCGTCTGTCATTTGAGAATGTTATAAAAATAGCTCCTGAGTTTGTGCTATTC	478	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_34664.1	2430	2e-24	2076 - 2135	100	60 / 60	plus	ABC13311 ABC14190 ABC33060
MLOC	MLOC_34664.5	882	2e-24	526 - 585	100	60 / 60	plus	ABC14190
MLOC	MLOC_34664.3	2011	2e-24	1584 - 1643	100	60 / 60	plus	ABC13311 ABC14190 ABC33060
MLOC	MLOC_34664.2	2384	2e-24	2030 - 2089	100	60 / 60	plus	ABC13311 ABC14190 ABC33060
MLOC	AK249426.1	1126	7e-23	515 - 574	98	59 / 60	plus	ABC14190
JLOC1	JLOC1_22375.7	1293	8e-25	580 - 639	100	60 / 60	plus
JLOC1	JLOC1_22375.5	1405	8e-25	628 - 687	100	60 / 60	plus
JLOC1	JLOC1_22375.4	1295	8e-25	582 - 641	100	60 / 60	plus
JLOC1	JLOC1_22375.2	1395	8e-25	636 - 695	100	60 / 60	plus
JLOC1	JLOC1_22375.1	1349	8e-25	590 - 649	100	60 / 60	plus
Harvest21	ABC14190	1133	3e-25	535 - 594	100	60 / 60	plus	ABC14190
Harvest21	ABC14189	546	3e-25	479 - 538	100	60 / 60	plus
Harvest35	U35_21459	1133	3e-25	535 - 594	100	60 / 60	plus
Harvest35	U35_21458	546	3e-25	479 - 538	100	60 / 60	plus

Contig Sequence (546 bp)

>U35_21458 546 Hv_44K_v2
GCCGTCACCGCCGACCTCCTCCCTTCGCCGGCGCGGCGCCTCCCTCTCCGTCCTCCTCCT
ATACAGGTGCTGCTATCTGGCACCACTCTCGCCGACTGGACCTGGCGGCCTGCCCAAGCT
CGACAAGTAGGCAATGAGCACAGCCGTGGATGCTTCATTACCTGTCGCCGAGCAGGAGGA
TGGTACTGCGAATATGTTGGGTGGGAAGAAAGTTGCAGTTGTATTTGTTCTAGGTGGTCC
TGGAAGTGGAAAAGGTACACAATGTAGCAATATTGTGGAGCATTTCGGATTTACACATCT
TAGTGCTGGAGAGCTGTTGCGCTCAGAAATCAAGTCTGGTTCTGAGAATGGAACCATGAT
TGACAGCATTATAAAGGAAGGGAAAATTGTTCCATCTGAGATAACCGTAAAGCTCTTGCA
AGAAGCTATGATAAAAAGTGAAAATAACAAATTCCTCATTGATGGATTTCCAAGGAATCA
AGAAAACCGTCTGTCATTTGAGAATGTTATAAAAATAGCTCCTGAGTTTGTGCTATTCTT
TGACTG

Homology of Contig U35_21458 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g53790.2	215	7e-71	protein\|adenylate kinase, putative, expressed
Brachypodium v1_2	Bradi1g20640.1	214	4e-71
Arabidopsis v10	AT5G26667.1	208	6e-57	\| Symbols: PYR6 \| P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr5:9276659-9277788 FORWARD LENGTH=208