barSeed - Barley Seed Development Database

Probe CUST_39600_PI390587928

Source Contig U35_21459

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39600_PI390587928	Hv_44K_v2	TACTATCGTCAAATTATGTAGTCTTTCTGGACATGGTGAAGGACATCTTGTGAGAAAAAA	1036	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249426.1	1126	2e-24	1043 - 1102	100	60 / 60	plus	ABC14190
MLOC	MLOC_34665.2	5062	2e-24	4925 - 4984	100	60 / 60	plus	ABC13311 ABC14190
JLOC1	JLOC1_22375.8	1328	8e-25	1071 - 1130	100	60 / 60	plus
JLOC1	JLOC1_22375.7	1293	8e-25	1036 - 1095	100	60 / 60	plus
JLOC1	JLOC1_22375.6	1324	8e-25	1067 - 1126	100	60 / 60	plus
JLOC1	JLOC1_22375.5	1405	8e-25	1148 - 1207	100	60 / 60	plus
JLOC1	JLOC1_22375.4	1295	8e-25	1038 - 1097	100	60 / 60	plus
JLOC1	JLOC1_22375.3	1343	8e-25	1086 - 1145	100	60 / 60	plus
JLOC1	JLOC1_22375.2	1395	8e-25	1138 - 1197	100	60 / 60	plus
JLOC1	JLOC1_22375.1	1349	8e-25	1092 - 1151	100	60 / 60	plus
Harvest21	ABC14190	1133	3e-25	1037 - 1096	100	60 / 60	plus	ABC14190
Harvest35	U35_21459	1133	3e-25	1037 - 1096	100	60 / 60	plus

Contig Sequence (1133 bp)

>U35_21459 1133 Hv_44K_v2
GGCCGCCGTCGCCGTCACCGCCGACCTCCTCCCTTCGCCGGCGCGGCGCCTCCCTCTCCG
TCCTCCTCCTATACAGGTGCTGCTATCTGGCACCACTCTCGCCGACTGGACCTGGCGGCC
TGCCCAAGCTCGACAAGTAGGTTTATTATCCATTGCTTGTTCAAGCTGAGTCATGGAATG
CTTGCAGCAATGAGCACAGCCGTGGATGCTTCATTACCTGTCGCCGAGCAGGAGGATGGT
ACTGCGAATATGTTGGGTGGGAAGAAAGTTGCAGTTGTATTTGTTCTAGGTGGTCCTGGA
AGTGGAAAAGGTACACAATGTAGCAATATTGTGGAGCATTTCGGATTTACACATCTTAGT
GCTGGAGAGCTGTTGCGCTCAGAAATCAAGTCTGGTTCTGAGAATGGAACCATGATTGAC
AGCATTATAAAGGAAGGGAAAATTGTTCCATCTGAGATAACCGTAAAGCTCTTGCAAGAA
GCTATGATAAAAAGTGAAAATAACAAATTCCTCATTGATGGATTTCCAAGGAATCAAGAA
AACCGTCTGTCATTTGAGAATGTTATAAAAATAGCTCCTGAGTTTGTGCTATTCTTTGAC
TGTTCTGAGGAAGAGATGGTAAGACGTCTTCTGGGTCGAAATCAGGGACGAGCTGACGAT
AACATTGAGACTATCAGAAAAAGATTCAGAGTTTTTGAAGAATCAAGTTTGCCTGTAGTT
CAGTACTATGACTCTAAGGGCAAGGTTAAGAAGATTAATGCTGCAAAACCAATCCCTGAG
GTGTTTGAAGATGTGAAAACCATTTTTCAGCCTTATGGCTCAAAGGCCGCATAGATGCGC
TCATGCGAAAAATATGTGGTTCACTAAATTGGTGACCCCAGAAGTACCGAAGGAAAAGGC
TGGAGTTCACGGCGCGCTACGCTGCCAGCATGCCACTAGATAATCATTAATTGTTTGATT
TAAAAGTATTTTGGATATTTGTTAGCAAGTAGAGAGGAACTGGAGCACATATCAGTTTAC
CTGCCATCCCATTTGGTACTATCGTCAAATTATGTAGTCTTTCTGGACATGGTGAAGGAC
ATCTTGTGAGAAAAAAAGGATTGCAATTAATTATTTGGCCTAAAAAAAAAAAA

Homology of Contig U35_21459 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g53790.2	215	1e-116	protein\|adenylate kinase, putative, expressed
Brachypodium v1_2	Bradi1g20640.1	214	3e-116
Arabidopsis v10	AT5G26667.1	208	3e-98	\| Symbols: PYR6 \| P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr5:9276659-9277788 FORWARD LENGTH=208