- Probe CUST_39509_PI390587928
- Source Contig U35_13925
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_39509_PI390587928 | Hv_44K_v2 | CCGAGTAACCCTAGATCTCGCTCCATCGCTTAGGTTCTGAGATGCTCTGGCTACCGTTAG | 661 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK373804 | 4193 | 2e-24 | 4031 - 4090 | 100 | 60 / 60 | plus | ABC00064 ABC00146 ABC00541 ABC00668 ABC36822 ABC39327 ABC53030 |
| MLOC | AK375907 | 709 | 2e-24 | 495 - 554 | 100 | 60 / 60 | plus | ABC00064 ABC00146 ABC00541 ABC00668 ABC36822 ABC39327 ABC53030 |
| MLOC | AK363553 | 2844 | 2e-24 | 116 - 175 | 100 | 60 / 60 | minus | ABC00064 ABC00146 ABC00541 ABC00668 ABC08988 ABC36822 ABC39327 ABC53030 |
| MLOC | AK357068 | 3933 | 2e-24 | 666 - 725 | 100 | 60 / 60 | plus | ABC00064 ABC00146 ABC00541 ABC00668 ABC18698 ABC36822 ABC39327 ABC53030 |
| MLOC | AK373421 | 854 | 2e-24 | 666 - 725 | 100 | 60 / 60 | plus | ABC00064 ABC00146 ABC00541 ABC00668 ABC36822 ABC39327 ABC53030 |
| MLOC | MLOC_24567.1 | 950 | 2e-24 | 131 - 190 | 100 | 60 / 60 | plus | ABC00146 ABC00668 ABC36822 ABC39327 |
| JLOC1 | JLOC1_16881.1 | 720 | 8e-25 | 131 - 190 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC39327 | 459 | 3e-25 | 121 - 180 | 100 | 60 / 60 | minus | ABC39327 |
| Harvest21 | ABC32235 | 531 | 3e-25 | 352 - 411 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00668 | 2046 | 3e-25 | 124 - 183 | 100 | 60 / 60 | minus | ABC00668 |
| Harvest21 | ABC00206 | 967 | 3e-25 | 662 - 721 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00146 | 309 | 3e-25 | 107 - 166 | 100 | 60 / 60 | minus | ABC00146 |
| Harvest21 | ABC00010 | 835 | 3e-25 | 658 - 717 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC46882 | 299 | 1e-23 | 146 - 205 | 98 | 59 / 60 | minus | |
| Harvest21 | ABC00922 | 547 | 1e-23 | 477 - 536 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_43100 | 459 | 3e-25 | 121 - 180 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_36830 | 531 | 3e-25 | 352 - 411 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_13925 | 721 | 3e-25 | 662 - 721 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_13904 | 966 | 3e-25 | 661 - 720 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_13960 | 547 | 1e-23 | 477 - 536 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_13941 | 1983 | 1e-23 | 1827 - 1883 | 100 | 57 / 57 | plus |
Contig Sequence (721 bp)
>U35_13925 721 Hv_44K_v2 GCAGGGGTTGGCTTCTCCTCCCCACTCAGTCCTCGGTTCCCCCGGTCCGGTTCGGTTCGG TTCGTTAGGGTTTAGCGGCGGGGAGAAGGATGGCCGACGTCGAGTACCGCTGCTTCGTGG GCGGCCTCGCCTGGGCCACCGACGACCAGTCCCTCCAGAACGCCTTCTCCAAGTACGGCG ACGTCATCGACTCCAAGATCATCACTGACAGGGAGACGGGCCGTTCCCGCGGGTTCGGGT TCGTCACCTTCGCGTCGGACGAGGCGATGCGCCAGGCCATCGAGGCCATGAACGGCCAGG ACCTGGACGGCCGTAACATCACCGTCAACGAGGCCCAGTCCCGCCGCTCCGGCGGAGGAG GAGGCGGCTTCGGCGGCGGCGGCGGCGGCTACGGAGGCCAGCGTCGTGAGGGCGGAGGCG GCGGCTACGGAGGCGGCGGCGGTGGCTACGGAGGTGGCCGCAGCGGCGGCGGCGGCGGCT ACGGCAGCCGTGACGGCGGCGGCGGCGGCTACGGCGGCGGCGGCGGCGGCTACGGTGGCA GCCGCGGCGGCTCCGGCGGCGGCAACTGGAGGGAGTGAATGGTGGGGCCCCTTGTCGGCC AGTTATCCTAGTTATCGATCTATCCTTTTCGTTTACCTGTCTACCGTGTNATCGCTCGCT CCCGAGTAACCCTAGATCTCGCTCCATCGCTTAGGTTCTGAGATGCTCTGGCTACCGTTA G
Homology of Contig U35_13925 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |