barSeed - Barley Seed Development Database

Probe CUST_39478_PI390587928

Source Contig U35_13940

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39478_PI390587928	Hv_44K_v2	GAGGGAGGGGAAGGGAAACTGTGAATGCCTCTTTGTAATAAAATTGTGAAGATGTGAAAA	855	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368087	892	3e-22	837 - 892	100	56 / 56	plus	ABC00054 ABC00085 ABC00137 ABC00145 ABC00167 ABC00188 ABC00427 ABC00440 ABC00443 ABC00648 ABC00709 ABC47465
JLOC1	JLOC1_21747.1	701	8e-25	577 - 636	100	60 / 60	plus
Harvest21	ABC29034	442	3e-25	344 - 403	100	60 / 60	plus
Harvest21	ABC00427	955	3e-25	856 - 915	100	60 / 60	plus	ABC00427
Harvest35	U35_29650	442	3e-25	344 - 403	100	60 / 60	plus
Harvest35	U35_13940	957	3e-25	856 - 915	100	60 / 60	plus

Contig Sequence (957 bp)

>U35_13940 957 Hv_44K_v2
GCACAAACGCACACTCCACCGCACAAAACAAGCCTAAAAAAAACCCCGAGGAAATCGACA
GGGAGAAAAGGGGGCGAAAAAAAGGAGAGCAAAGAGGAAAAGCTTCGGAGCTCTGGATCG
GCGATGGAGTCGGTAGCGAAGGCGCCGAAGAAGGCCGGCGCGGCCGGGCGCCGGGGCGGC
GGCGGGCCGAAGAAGAAGGCCGTCTCACGCTCCGTCAAGGCCGGCCTCCAGTTCCCCGTG
GGCCGCATCGGGCGCTACCTCAAGCAGGGCCGCTACGCCAAGCGCGTCGGCAGCGGCGCC
CCCGTCTACCTCGCCGCCGTCCTCGAGTACCTCGCCGCCGAGCTCCTGGAGCTGGCGGGG
AACGCGGCGCGGGACAACAAGAAGAACCGGATCATCCCGCGGCACGTGCTGCTCGCGATC
CGCAACGACCAGGAGCTCGGGAAGCTGCTGGCCGGCGTCACCATCGCCTACGGAGGTGTC
CTGCCCAACATCAACCCCGTGCTGCTTCCCAAGAAGCCCGCCGCGGCGGCTGCCAAGGAG
CCCAAGGCGGGCACCACCAAGTCTCCCAGGAAGTCCCCCGCCAAGAAGGCGGCCGCCGCT
TAGGCCCGGCACTCGCTATGCCGGTGCCCCATCTCACCCTCTCCTCCCTCTTCTCTGTTT
CTCTGTCTGTCTGGGTTGAACCGTAACGCACCAAGTTGTCGTCGTCGTCGTTGCTGCATG
CCGTCGTTGCCATGGATCGATTGCTGCTTGTTTGTACTTATTTTGCGTGGCTTCCGCATA
GGTGCCAATCAGCTTATACTCTGTAACCTGATTAACACCGCTGTATGTTCGTATAAGTTC
GTAGGTCAAGGGAGAGAGGGAGGGGAAGGGAAACTGTGAATGCCTCTTTGTAATAAAATT
GTGAAGATGTGAAAAAAAAAAAAAAAAACTGATTGTCGTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_13940 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None