- Probe CUST_39322_PI390587928
- Source Contig U35_46022
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_39322_PI390587928 | Hv_44K_v2 | GGTACTTGCCTGCTGTATTAATTCATTGCAAGTATATCGTGGTACACAGCACAGGAAAAT | 358 | GeneList: None MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.228 | 0.764 | 0.701 | 1.011 | 1.265 | 1.126 |
| Raw | 5.979 | 2.733 | 4.103 | 10.901 | 3.461 | 2.918 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_78457.1 | 693 | 2e-24 | 618 - 677 | 100 | 60 / 60 | plus | ABC06725 ABC07663 |
| Harvest21 | ABC45543 | 418 | 3e-25 | 359 - 418 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_46022 | 418 | 3e-25 | 359 - 418 | 100 | 60 / 60 | plus |
Contig Sequence (418 bp)
>U35_46022 418 Hv_44K_v2 GAAGGCTCACACTTCAACCCGAGCAGCGATCTGTTTACCCCCAAGGAGAGGCGTGATGTG ATCATCTCCACCACCTGCTGGTTCACGATGATTGCGCTGCTCATCGGCATGGCGTGTGTC TTTGGCCTGGTACCGGTGCTCAAGCTGTACGGGGTTCCATACATTGTAAGCAACCATACA GAATCTGCAACTCTTAACTGTTTAGGTTGAAGGACTTGCTTCTAAGCAACTTGCACTGAA GAACTAACTCAAGTAGCAATGTCTCGTGTCATTTGAAACAGGTGAATGTCATGTGGCTTG ATTTGGTGACATATCTTCACCACCATGGTCACCAGGACCTCCCTTGGTACCGCGGCGAGG TACTTGCCTGCTGTATTAATTCATTGCAAGTATATCGTGGTACACAGCACAGGAAAAT
Homology of Contig U35_46022 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |