barSeed - Barley Seed Development Database

Probe CUST_38869_PI390587928

Source Contig U35_48313

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38869_PI390587928	Hv_44K_v2	CTGATTGCTCATCTTTGTTGAACACCTGAGCATTTTCTATATTCGAACACTTAGAAATCA	-1	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_26778.1	1224	3e-21	498 - 557	97	58 / 60	plus	ABC04556 ABC04557 ABC04559 ABC04560 ABC16638 ABC38793
JLOC1	JLOC1_18162.1	964	2e-21	165 - 224	97	58 / 60	plus
Harvest21	ABC16638	656	1e-23	26 - 86	98	60 / 61	plus	ABC16638
Harvest35	U35_48313	661	1e-23	576 - 636	98	60 / 61	minus

Contig Sequence (661 bp)

>U35_48313 661 Hv_44K_v2
TCTCTATGTTTACATAACACAATAAGTTATTGTACAGCTCCATGACGTTGTTCTACAGTA
CTGTGAAATTACATCCATGATAGCTAATTGTACAAAAGAGTGAATGAAATGAACTACGAA
AATCCAGCATCATAGATCTACAGACGGGCTTCTCAAAAGTGAGCCAAGTTGTATACTAGA
GTCCATGAAAGCAGGAAAAGGGTGAACGAGGCAAAGAGCCCCTCCTGAATTAGGGCGGCA
TGGCCTCCAAAGTCTTCCTCATCAATCTTCAGCAGATGTGCATAGTACAAATGAAATATT
ACGGTGGAAATGGTAAAGAATCTGCAATAGAGAAAAAAAGAATATGCCACATGGTCAATT
TGGCTGAGAAGAGGTAAAGCATTCTGCATTTATTGAAAGGGTGTTGAAGCTATCCTAATA
CGACAAGCGGATTTTAGAAATTCACTGGCTAACTTGTAACAAGTCATATGGGTTATTATA
GTCCTGAATAGCTGATACCAAAATACAATATAATCTAGTATGACAAGCGCTTTAATCAAA
CGGGCATAGTACTGCCTATGGGAAATGTCAAGCCATGATTTCTAAGTGTTCGAATATAGA
AAATGCTCAGNGTGTTCAACAAAGATGAGCAATCAGGCAATATCACTGCTCACAACACAA
T

Homology of Contig U35_48313 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None