barSeed - Barley Seed Development Database

Probe CUST_38826_PI390587928

Source Contig U35_2463

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38826_PI390587928	Hv_44K_v2	CGACTTGAGCCATCATGGCAACTTTGTTGAGTTCAAATAATCATTACATGTTCATAAGGC	1696	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372814	3841	2e-24	1662 - 1721	100	60 / 60	plus	ABC02387 ABC02395 ABC07309 ABC07310 ABC47834
MLOC	MLOC_58947.1	1999	2e-24	1921 - 1980	100	60 / 60	plus	ABC07309 ABC07310
JLOC1	JLOC1_38325.1	1834	8e-25	1718 - 1777	100	60 / 60	plus
Harvest21	ABC07309	1829	3e-25	1697 - 1756	100	60 / 60	plus	ABC07309
Harvest35	U35_2463	1830	3e-25	1697 - 1756	100	60 / 60	plus

Contig Sequence (1830 bp)

>U35_2463 1830 Hv_44K_v2
GAAGGACCGAAGGAGATTCTAGCAGCCGGAAAAAATGGTGTCCCGCGCTGGGCTCGCCTC
CCTCCTCGGCGCCTCCTTCCTCCTCCTCCTCGCGCGCAGCGCCGAGCCGCTCGGGTTCAG
CCACCGCCCGCGGACCGCCGGCGGCGAGCTCTCGGCCGCCCCGAGCAGATACCTGGCGCG
GGAGGAGCGCTGGATGAGCCAACGCCTCGACCACTTCTCCTCCAGCGACCATCGCCAATT
CAAGCAGCGCTACTTCGAGTTCCTCGACTACCACGACGACCCCACGGGGCCGGTGTTCCT
GCGCATCTGCGGCGAGTCCTCCTGCGACGGCATCCCCAACGACTACCTGGCCGTCATCGC
CAAGAAGTTCGGCGCGGCCGTGGTGACGCCGGAGCACCGGTACTACGGCAAGAGCTCCCC
GTTCGACAGCCTCACCACCGACAACCTCAGGTTCCTCTCGTCCAAGCAGGCGCTCTTCGA
CCTCGCCGTCTTCCGCCAGTATTACCAGGAAAAACTGAATTCTCGGTACAACCGGAGCGC
GGGGTTCGACAATCCGTGGTTCGTCTTCGGGGTCTCCTACTCCGGGGCTCTCAGCGCCTG
GTTCAGGCTCAAGTTCCCTCACCTGACATGCGGAAGCCTAGCGAGCTCTGGGGTGGTTCT
TGCTGTGTACAACTTCACTGATTTCGACAAGCAGGTCGGAGATTCGGCTGGCCCTGAGTG
CAAAGCTGCCCTTCAGGAAATAACCAGACTTGTCGACAAACAGCTTCTGTCGGATAGCCA
CTCGGTGAAGGCCTTGTTCGGAGCAGATTCGTTGAAAAATGACGGTGACTTCCTCTTTCT
ACTGGCAGATGCAGCAGCGACAACATTCCAGTATGGGAATCCTGATGCCTTGTGCTCCCC
TCTAGCAAATGCGAAGAAAAAGGGGGAAAGTTTGGTGGAAACATATGCTCACTTTGTGAA
AGATTACTACATTAAAAAATTGGGGACTACAGTATCTTCTTATGATCAAGAGTATTTGAA
GGAAACAACTCCCGATGATTCTAGTTCTAGGCTTTGGTGGTTCCAAGTTTGCAGTGAAGT
TGCCTATTTTCAAGTCGCACCCAAAAATGATAGTGTTCGTTCTGCGCAGATCGATACAAG
GTACAATTTGGACCTGTGTAAAAATGTTTATGGAGAAGGAGTTTATCCCGATGTGTTCAT
GACAAACTTATATTACGGAGGGACAAGTATTGCTGCTTCTAAAATTGTGTTCACAAATGG
CTCTCAAGATCCATGGCGTCATGCCTCCAAACAGAAATCATCGGAAGGCATGCCATCATA
CATAATCAAATGTAGCAACTGCGGACATGGCACTGATTTGAGAGGATGTCCCCAGCTTCC
TTTCAGGATTGAAGGTGACTCTTCAAACTGCACGTCCCCAGAAGCGGTGAACACAGTAAG
GAAGCAGATCGTCAAGCACATCGACCTGTGGCTATCACAATGCCATGAGCCAGCAAGGGC
GTGGTGAGGCGACGACGACTCGCACCTGTTTAGGAGGAGTAAAGAAGCAGTCTGTAGAGC
AAGGACCGAAGGAACAATTGCAAGTTTGCGACATGCTGCGGAGACAGTGAACCATATGCG
GATTGACAAGCCGGTCCCGGATGCGATTGCGTGCAGGTTTGTTTCGATCATCACATGGTT
GTGCTTGTATTCCGGACGACTTGAGCCATCATGGCAACTTTGTTGAGTTCAAATAATCAT
TACATGTTCATAAGGCTTTAAAAAAAAAAAAAAAAATTTTTCTATTTTAATATATATAGA
AAGTTTATTCATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_2463 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os10g36780.1	491	protein\|OsProCP4 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed
Brachypodium v1_2	Bradi3g30630.1	490
Arabidopsis v10	AT4G36195.1	488	Serine carboxypeptidase S28 family protein \| chr4:17127202-17129787 FORWARD LENGTH=488