barSeed - Barley Seed Development Database

Probe CUST_3878_PI390587928

Source Contig U35_1290

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3878_PI390587928	Hv_44K_v2	GTATCTTGTGTTGGAATAAGGAAGCAAGAGCAACCTATATTTGTCCACTGTCTCAAAAAA	1291	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_76018.2	1396	7e-23	1319 - 1379	98	60 / 61	plus	ABC05311 ABC05312 ABC05313
MLOC	MLOC_76018.1	1925	3e-21	1810 - 1867	98	57 / 58	plus	ABC05311 ABC05312 ABC05313
JLOC1	JLOC1_50708.1	1679	2e-21	1481 - 1538	98	57 / 58	plus
Harvest21	ABC05311	1328	2e-21	1272 - 1328	98	56 / 57	plus	ABC05311
Harvest35	U35_1290	1362	3e-25	1292 - 1351	100	60 / 60	plus

Contig Sequence (1362 bp)

>U35_1290 1362 Hv_44K_v2
CCGTCCTCTCACCACAAAGGTTTGCAGTAACGCTTACCAACAGCAGACGCTAGCTAGCCA
GCCGGCGTCATGGCCAACGAGGAGGCGTTGATGTTCGCGCTGCAGCTGGCTTCGTCGGCT
GTCCTGCCGATGACGCTTCGCACTTGCATCGAGCTGGGCCTGCTGGAGACCCTGGTGGGC
GCCGGTGGGAAGACGTTGACGCCGGAAGAGGTAGCGGCCAAGCTTCCGTCCAAAGCGGAG
TCCAACCCGGACGCGGCGTCCATGGTGGATCGGTTGCTGCGGGTACTGGCAACATACAAG
GTCGTTTCGTGCCTAGTGGATGAGTGCGCAGACGGGAGCCTGTCCCGCAGGTATGGCGCT
GAGCCGGTGTGCAAGTGGCTCACTCCCAACGAGGACGGTGTCTCCATGGCGCCCTTCTGC
CTCCTTGCCCAGAACAAGCTCTTCATGGAGGCCTGGTGTCACATGAAGGACGCGGTCCTT
GAGGGTGGCAGTGCATTCACCAAGGCATTCGGAGCGTCGTGGTTTGACTACGCTGGCACA
GATGATCACTTCAATCACCTCTTTAACGAGGCCATGAAGGACCATTCGGTCATCATCACC
AAGAAGCTTCTCGAATTGTATACTGGTTTCGACGGCATCGACACCCTTGTGGATCTCGCG
GGTGGCGTGGGCGCCGTCATCCACGCCATCACCAAGAAGTACCCGAGCATAAAGGGGATC
AACTTCGACCTTCCCCACGTAATCTCCGACGCGCAGCCCTACCCCGGCGTCGAACACGTC
GGCGGCGACATGTTTGAGATGGTGCCGTCCGGAGACGCCATCCTCATGAAATGGATTCTC
CCCTGCTTCAGCGACGACGAGTGTGCGGTACTCCTCAAGAACTGCTACGACGCACTGCCC
GCGCATGGTAAGGTGATCAACGTGGAATGTATCCTGCCAGTGAACCCGGACGCGACAAAC
AACGCGCAGGGGTTAATCTGTGTGGACGCCAGCTTGCTGGCGTACAGCCCCGGCGGCAAG
GAAAGGAACCTCAGGGACTTCGAGAAGCTAGCCAAGGCTGCAGGGTTTACAGGCGTCAAG
GCCAGCTACATCTTTGCGAACTTCTGGGCAATGGAGTACACCAAGTAGAGTGATCTATCA
CTTCTACTGGGAGCCTGCTGCTGCTTTCTACCACCTCATTTGCCATAAAAAAAATCACAA
AAAAAATTCCCTCCATTTTGTTAGATTTCTTGGTCATGGCTTGTTTTTAGTCGACCGTAC
GTGTCGGGTGTTAACTCAAGAGTCTATGTTTGTATCTTGTGTTGGAATAAGGAAGCAAGA
GCAACCTATATTTGTCCACTGTCTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_1290 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g06100.1	369	3e-161	protein\|O-methyltransferase, putative, expressed
Brachypodium v1_2	Bradi2g02390.1	356	0.0
Arabidopsis v10	AT5G54160.1	363	5e-128	\| Symbols: ATOMT1, OMT1 \| O-methyltransferase 1 \| chr5:21982075-21984167 FORWARD LENGTH=363