barSeed - Barley Seed Development Database

Probe CUST_3875_PI390587928

Source Contig U35_1291

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3875_PI390587928	Hv_44K_v2	TTCATTTTGTATTTTGTGTTCGAATAAAAGGAAGCAAGGGCAACATGCGTGTCCTCCATG	1288	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_75528.1	1343	6e-24	1272 - 1330	100	59 / 59	plus	ABC05311 ABC05312 ABC05313
JLOC1	JLOC1_50390.1	1590	3e-24	1377 - 1435	100	59 / 59	plus
Harvest21	ABC05312	1319	1e-24	1255 - 1313	100	59 / 59	plus	ABC05312
Harvest35	U35_1291	1368	3e-25	1289 - 1348	100	60 / 60	plus

Contig Sequence (1368 bp)

>U35_1291 1368 Hv_44K_v2
TCGAGCACTGTTGGCCTATGAATCAAACATCGGCCAAGTGCGAGCCATCCACCAGTTCAC
CAGCAAGCTTGGGATTAACACACGTACCATCTCGAGCAGCTAGATAGCCCTCCACAGTCC
ACATGGCCAACGAAGAGGCGTTAATGTTCGCGCTGCAGCTGGCTTCGTCGGCGGTCCTGC
CTATGACGCTACGGACGTCCATCGAGCTGGGCCTGCTCGAGACCCTGGTGGGCGCCGGTG
GGAAGGTGCTGACCCCCGAGGAGGTGGCGGCGAAGCTGCCGTCCAAAGCCGAGGCCAACC
CGGACGCGGCGTCCATGGTGGATCGGCTGCTGCGGGTGCTGGCAGCATACAAGGTCGTGT
CGTGCGTGGTGGCCGAGTCCAGCGACGGCAGCCTCTCACGCCGGTACGGCGCCGAGCCGG
TGTGCAAGTGGCTCACCCCCAACGAGGAAGGCGTCTCCATGGCCCCCTTCTGCCTCCTCG
CCCAGGACAAGCTCTTCATGGAGGCCTGGTGCCACATGAAGGACGCGGTCCTTGAAGGTG
GCAGTGCATTCACCAAGGCATTCGGGGCGTCCTGGTTCGACTACGCCGGCACGGATGCGC
GCTTCAACTCCGTCTTCAACGAGGCCATGAAGCAACATTCTGTGATCATCACCAAGAAGC
TCCTCGAACTGTACACCGGTTTCGACGGCATCGGCACCCTGGTGGATGTCGCCGGCGGCG
TGGGTGCTGTCGTCCACACCATCACCAAGAAGTACCCGAGCATCAAGGGGATCAACTTCG
ACCTTCCCCATGTGATCTCCGATGCACAGCCTTGCCCTGGCGTGGAGCACGTCGGCGGCG
ACATGTTCGAGAAGGTGCCCACCGGAGACGCCATCCTCATGAAGTGGATCCTCAACTGCT
TTAGCGACGACGAGTGTGCCATCCTGCTCAAGAACTGCTACGACGCACTGCCGGCGCATG
GTAAGGTGATCAACGTGGAGTGTATCCTGCCGGTGAACCCGGACGCCACAAACAGCACGC
AGGGGTTAATCAGCGTGGACGTGAGCCTGCTGGCGTACAGCCCCGGCGGCAAGGAAAGGT
ACCTGAGGGACCTCGAGAAGCTCGCCAGGGCTGCCGGGTTTACCGGCGTCAAGGCCACCT
ACATCTACGCCGACTTCTGGGCAATGGAGTACACCAAGTAGCGAGGTCACAGCTCGTATA
GCATGCTGCTGTGTTCTTGCTACCAGCTCAATTTCTAATAAATCTTAATCGACCGTAAGA
GGGAGGGTTGGTGTGTTAACCCAATCGTTTCATTTTGTATTTTGTGTTCGAATAAAAGGA
AGCAAGGGCAACATGCGTGTCCTCCATGAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_1291 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g06100.1	369	2e-156	protein\|O-methyltransferase, putative, expressed
Brachypodium v1_2	Bradi2g02390.1	356	0.0
Arabidopsis v10	AT5G54160.1	363	4e-122	\| Symbols: ATOMT1, OMT1 \| O-methyltransferase 1 \| chr5:21982075-21984167 FORWARD LENGTH=363