barSeed - Barley Seed Development Database

Probe CUST_38286_PI390587928

Source Contig U35_14143

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38286_PI390587928	Hv_44K_v2	ACACTAGTGACTGCATTTTTCTAAATTTATTCCAGTCAATCCGACAATGTCCGTTTGGTA	1000	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.974	0.813	0.720	0.588	1.345	1.198
Raw	2.708	2.716	2.484	3.243	2.888	2.832

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_18451.1	890	2e-24	95 - 154	100	60 / 60	minus	ABC02787 ABC02788 ABC02789 ABC02790 ABC02792 ABC49421
JLOC1	JLOC1_12771.1	1008	8e-25	211 - 270	100	60 / 60	minus
Harvest21	ABC02789	1063	3e-25	1001 - 1060	100	60 / 60	plus	ABC02789
Harvest35	U35_14143	1063	3e-25	1001 - 1060	100	60 / 60	plus

Contig Sequence (1063 bp)

>U35_14143 1063 Hv_44K_v2
GGTTCACCACCGCTGCACGCACGCACGCACACTACCATCACAATTCACAAGTCCTCCATG
GCGTCATCTCGCGTTGTTAGCCTCCTGGCCGGTCTCCTCCTTGCCGCCCTCGCCGCAAGC
ACAGACGCGGCCACCATCACCGTCGTCAACCGGTGCTCCTACACGGTGTGGCCGGGCGCG
CTCCCAGGTGGCGGCGTGCGTCTCGACCCAGGCCAGTCGTGGGCTCTGAACATGCCGGCC
GGCACCGCGGGCGCCAGGGTGTGGCCGCGCACGGGGTGCACCTTCGACGGCAGCGGCCGT
GGCCGGTGCATCACCGGAGACTGCGGCGGCGCGCTGGCATGCCGCGTGTCCGGCCAGCAG
CCCACCACGTTGGCCGAGTACACCCTGGGACAGGGCGCGAACAAGGACTTCTTCGACCTG
TCCGTCATCGACGGGTTCAACGTTCCCATGAGCTTCGAGCCCGTCGGCGCGTCGTGCCGT
GCTGCGCGGTGTGCCACGGACATCACCAAGGAGTGCCTCAAGGAGCTGCAGGTGCCGGGA
GGGTGCGCGAGCGCGTGCGGCAAGTTCGGCGGCGACACCTACTGCTGCCGGGGCCAGTTC
GAGCACAACTGTCCGCCGACCAACTATTCGAAGTTCTTCAAGGGCAAGTGCCCCGACGCC
TATAGCTATGCCAAGGACGACCAGACCAGCACCTTCACCTGCCCTGCCGGAACAAACTAC
CAGATCGTCCTCTGCCCTTAAATTACGTCATCGGTATAATTACTGGGATCAATAAGGAAT
AAGGACTACTCTCAGTCCAGTTATGATCAGCAACCATGTGTATCAGCAACCATGTGTACT
AACATATATGCATGCATGACTAGTGCGTGTATGTCGATCGAGTTGTCGACCAATAATAAA
TAAATTGTTACGTAATTAAAAAAAAAAAAAACTGAGCTAGTAGATGGTTAGTTTTCTTGT
GGTGGAAACAAACACAACGGGGTTCAAGTTCTTAGATTCGACACTAGTGACTGCATTTTT
CTAAATTTATTCCAGTCAATCCGACAATGTCCGTTTGGTAAAA

Homology of Contig U35_14143 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g43490.1	259	1e-116	protein\|thaumatin, putative, expressed
Brachypodium v1_2	Bradi4g05440.1	228	7e-139
Arabidopsis v10	AT4G11650.1	244	4e-79	\| Symbols: ATOSM34, OSM34 \| osmotin 34 \| chr4:7025127-7026113 REVERSE LENGTH=244