barSeed - Barley Seed Development Database

Probe CUST_38281_PI390587928

Source Contig U35_14148

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38281_PI390587928	Hv_44K_v2	GCTTCATGACGGGTGAGTGCATGTCATTCAGCGAATAAATGTATAAATAAAAGGGACGTG	843	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.955	0.768	0.713	3.371	1.418	1.519
Raw	10.905	11.301	12.721	86.310	14.575	16.667

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355673	924	6e-24	830 - 888	100	59 / 59	plus	ABC02787 ABC02788 ABC02789 ABC02790 ABC02792 ABC39853 ABC49421
MLOC	MLOC_32483.1	250	6e-24	39 - 97	100	59 / 59	minus	ABC02792 ABC39853 ABC49421
JLOC1	JLOC1_21177.1	250	3e-24	39 - 97	100	59 / 59	minus
Harvest21	ABC02793	903	3e-25	813 - 872	100	60 / 60	plus
Harvest21	ABC49421	517	1e-24	127 - 185	100	59 / 59	minus	ABC49421
Harvest21	ABC39853	363	1e-24	32 - 90	100	59 / 59	minus	ABC39853
Harvest21	ABC26736	533	1e-24	325 - 383	100	59 / 59	plus
Harvest21	ABC02794	893	1e-24	792 - 850	100	59 / 59	plus
Harvest21	ABC02792	840	1e-24	32 - 90	100	59 / 59	minus	ABC02792
Harvest35	U35_14148	961	3e-25	844 - 903	100	60 / 60	plus
Harvest35	U35_14155	562	1e-24	355 - 413	100	59 / 59	plus
Harvest35	U35_14153	610	1e-24	488 - 546	100	59 / 59	plus

Contig Sequence (961 bp)

>U35_14148 961 Hv_44K_v2
CAGCACCAAACCACCATATTCACAAACAAGAACGGCACAAGCCATGGCGTTCTCCGGCGT
CGTCCACCTCATCGCTCTCGTGATCGCGGCCGCTGCCGCTGCCACCGATGCGACCACCAT
AACCGTGGTGAACCGGTGCTCCTATACGATATGGCCAGGCGCGCTCCCAGGCGGCGGCGC
GCGTCTCGACCCGGGCCAGTCGTGGCAGCTCAACATGCCCGCGGGCACGGCGGGCGCCAG
GGTGTGGCCGCGCACGGGGTGCACCTTCGACCGCAGCGGCCGTGGCCGGTGCATCACCGG
CGACTGCGCGGGCGCTCTGGTCTGCCGCGTGTCCGGCGAGCAGCCAGCCACGCTGGCCGA
GTACACGCTCGGCCAGGGCGGGAACCGGGACTTTTTCGACCTGTCCGTCATAGACGGGTT
CAATGTGCCCATGAGCTTCCAGCCCGTCGGCGGCGCGCCGTGCCGCGCGGCTACCTGCGC
CGTGGACATCACCCATGAGTGTCTGCCGGAGCTGCAGGTGCCCGGAGGGTGCGCGAGCGC
GTGCGGCAAGTTTGGCGGCGACACCTACTGCTGTCGTGGCCAGTTCGAGCACAACTGCCC
GCCGACATACTACTCGAGGTTCTTCAAGGGCAAGTGCCCCGACGCCTACAGCTACGCCAA
GGATGACCAGACCAGCACCTTCACCTGCCCGGCCGGAACCAACTACCAGATCGTGCTCTG
CCCTGCCCGAAATGATTTACACATGGATCAGTAAGTAGAGAGGACTAGTCCTTGTAGTCT
TCCTTACTTATTATGATCATCGATCGATCGTATCAGTGTGTGCCATATGTCCATATATGC
GTGGCTTCATGACGGGTGAGTGCATGTCATTCAGCGAATAAATGTATAAATAAAAGGGAC
GTGTAATTTTTAAGGTTATGTGAAGTGCAACTCTGTTATATTTTAAAAAAAAAAAAAAAA
A

Homology of Contig U35_14148 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g43490.1	259	8e-117	protein\|thaumatin, putative, expressed
Brachypodium v1_2	Bradi4g05440.1	228	1e-132
Arabidopsis v10	AT4G11650.1	244	5e-76	\| Symbols: ATOSM34, OSM34 \| osmotin 34 \| chr4:7025127-7026113 REVERSE LENGTH=244