- Probe CUST_38252_PI390587928
- Source Contig U35_14153
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_38252_PI390587928 | Hv_44K_v2 | CGGGTGAGTGCATGTCATTCAGCGAATAAATGTATAAATAAAAGGGACGTGTAATTTTTA | 495 | GeneList: None MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.836 | 0.616 | 0.906 | 2.289 | 0.966 | 1.469 |
| Raw | 10.633 | 10.424 | 17.963 | 64.663 | 10.863 | 17.764 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK355673 | 924 | 2e-24 | 838 - 897 | 100 | 60 / 60 | plus | ABC02787 ABC02788 ABC02789 ABC02790 ABC02792 ABC39853 ABC49421 |
| MLOC | MLOC_32483.1 | 250 | 2e-24 | 30 - 89 | 100 | 60 / 60 | minus | ABC02792 ABC39853 ABC49421 |
| JLOC1 | JLOC1_21177.1 | 250 | 8e-25 | 30 - 89 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC49421 | 517 | 3e-25 | 118 - 177 | 100 | 60 / 60 | minus | ABC49421 |
| Harvest21 | ABC39853 | 363 | 3e-25 | 23 - 82 | 100 | 60 / 60 | minus | ABC39853 |
| Harvest21 | ABC26736 | 533 | 3e-25 | 333 - 392 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC02794 | 893 | 3e-25 | 800 - 859 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC02793 | 903 | 3e-25 | 822 - 881 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC02792 | 840 | 3e-25 | 23 - 82 | 100 | 60 / 60 | minus | ABC02792 |
| Harvest35 | U35_14155 | 562 | 3e-25 | 363 - 422 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14153 | 610 | 3e-25 | 496 - 555 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14148 | 961 | 3e-25 | 853 - 912 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14140 | 795 | 2e-22 | 567 - 624 | 98 | 57 / 58 | plus |
Contig Sequence (610 bp)
>U35_14153 610 Hv_44K_v2 CGAGTACACGCTCGGCCAGGGCGGGAACCGGGACTTTTTCGACCTGTCCGTCATAGACGG GTTCAATGTGCCCATGAGCTTCCAGCCCGTCGGCGGCGCGCCGTGCCGCGCGGTTACCTG CGCCGTGGACATCACCCATGAGTGTCTGCCGGAGCTGCAGGTGCCCGGAGGGTGCGCAAG CGCGTGCGGCAAGTTTGGCGGCGACACCTACTGCTGCCGGGGCCAGTTCGAGCACAACTG CCCGCCAACCTACTACTCGAAGTTCTTCAAGGGCAAGTGCCCCGACGCCTACAGCTACGC CAAGGACGACCAGACCAGCACCTTCACATGTCCCGCCGGAACCAACTACCAGATCGTGCT CTGCCCTGCCCGAAATGATTTACACATGGATCAGTAAGTAGAGAGGACTAGTCCTTGTAG TCTTCCTTACTTATTATGATCATCGATCGATCGTATCAGTGTGTGCCATATGTCCATATA TGCGTGCCTTCATGACGGGTGAGTGCATGTCATTCAGCGAATAAATGTATAAATAAAAGG GACGTGTAATTTTTAAGGTTATGAAAAAAAAAAAAAAGTTATATATTTTTTTAAAAAAAA AAAAAAAAAA
Homology of Contig U35_14153 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os12g43490.1 | 259 | 1e-65 | protein|thaumatin, putative, expressed |
| Brachypodium v1_2 | Bradi4g05440.1 | 228 | 9e-78 | |
| Arabidopsis v10 | None |