barSeed - Barley Seed Development Database

Probe CUST_38190_PI390587928

Source Contig U35_14171

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38190_PI390587928	Hv_44K_v2	GGGGTTCTTGTCAAACTACCTGAAAGCTTATTTTGTTGGTACTTAAGCATTTGTACATTT	1570	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_73132.1	1231	2e-24	1126 - 1185	100	60 / 60	plus	ABC01389 ABC01393 ABC05177
MLOC	MLOC_73132.2	1905	2e-24	13 - 72	100	60 / 60	minus	ABC01389 ABC01393 ABC01397 ABC05177
JLOC1	JLOC1_48672.1	1888	8e-25	1716 - 1775	100	60 / 60	plus
Harvest21	ABC01393	1701	3e-25	1571 - 1630	100	60 / 60	plus	ABC01393
Harvest35	U35_14171	1738	3e-25	1571 - 1630	100	60 / 60	plus

Contig Sequence (1738 bp)

>U35_14171 1738 Hv_44K_v2
CCGCCTCGCTCTCACGCCGCTCGCGTCACTCCGCGCTCCCACGAACCACCCCCAAATTCC
GTCAACGCGCCAACCCCGAGAAAAGCGCTTGAGAAATGGCCGAAGAGGATGTCCAGCCGA
TTGTGTGTGACAATGGCACCGGAATGGTCAAGGCTGGATTCGCCGGCGACGACGCGCCGA
GGGCCGTGTTCCCCAGCATCGTGGGGAGGCCGCGGCACACGGGGGTGATGGTGGGCATGG
GGCAGAAGGACGCGTACGTGGGCGACGAGGCGCAGTCGAAGCGAGGCATCCTGACGCTCA
AGTACCCGATCGAGCACGGCGTGGTGGGCAACTGGGACGACATGGAGAAGATCTGGCACC
ACACCTTCTACAACGAGCTCCGGGTGGCGCCGGAGGAGCACCCCGTGCTGCTCACGGAGG
CGCCCATGAACCCCAAGGCCAACCGGGAGAAGATGACCCAGATCATGTTCGAGACCTTCA
ACTGCCCCGCCATGTACGTGGCCATCCAGGCCGTGCTGTCCCTCTACGCCAGCGGCCGGA
CCACCGGCATCGTCATGGACTCGGGCGACGGCGTCAGCCACACCGTCCCCATCTACGAGG
GCTTCACGCTCCCCCACGCCATCATCCGGCTGGACCTCGCCGGGCGCGACCTCACCGACG
GCCTCATGAAGATCATGACGGAGAGGGGCTACTCCTTCACCACCACCGCCGAGCGGGAAA
TCGTCAGAGACATCAAGGAGAAGCTCGCCTACGTCGCCCTCGACTACGAGCAGGAGCTGG
AGACCGCCAGGACCAGCTCCGCCGTCGAGAAGAACTACGAGCTGCCGGACGGCCAGGTGA
TCACCATCGGGGCGGAGCGGTTCAGGTGCCCCGAGGTGCTCTTCCAGCCGTCCATGATCG
GCATGGAGGCCGCAGGCATCCACGAGGCCACGTACAACTCCATCATGAAGTGCGATGTCG
ATATCAGGAAGGATCTGTACGGGAATGTCGTGCTCAGCGGGGGTTCCACCATGTTCCCTG
GGATCGCCGACCGTATGAACAAGGAGATCACCGCGCTCGCGCCCAGCAGCATGAGGGTGA
AGGTGGTCGCTCCGCCGGAGAGGAAGTACAGTGTGTGGATCGGCGGCTCCATTCTCGCCT
CCCTCAGTACCTTCCAGCAGATGTGGATCTCCAAGGCAGAGTACGACGAAGCTGGCCCGT
CGATCGTCCACATGAAGTGCTTCTGATCAGTCCATGGCTTGCCAACCTGTACCTGTCATT
CAGTTGCTTGAGGTCCAAATCGCAGATGCTTGAACGTGTCATGGTTTCCACTGCGTCGTG
GTTGGCTGAAAGTGTTTTGGTCATGGAACAAATTTGAAAGGTAAGGTCTGATTGATGGTT
TCGAACGATTCTGTAGGGCGTCGGGTCAGTTTCAGTGGGTTCACTGAAGGTGGGTTGTTC
AGCATGCAGTCTGGGGCATTTCTGTCGGGTTCGGTGATTCAGCTCGTGCGTGTGCTGGAA
ACCTGAAACAGAGTGTGTGTTTGTTTGCACCACCCCGGCGTGGGTGTTGATTCTTGTACC
TTTTGTAGCGGGGGTTCTTGTCAAACTACCTGAAAGCTTATTTTGTTGGTACTTAAGCAT
TTGTACATTTAAATTATTGAGGGGATTTTATGTTTGTTAAAAAAAAAAAAAAAAATATGG
AGTACGTACTCTTTTTATATACATGACAATTCATTCAATTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_14171 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g64630.1	377	protein\|actin, putative, expressed
Brachypodium v1_2	Bradi2g56000.1	377
Arabidopsis v10	AT5G09810.1	377	\| Symbols: ACT7 \| actin 7 \| chr5:3052809-3054220 FORWARD LENGTH=377