barSeed - Barley Seed Development Database

Probe CUST_38187_PI390587928

Source Contig U35_14174

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38187_PI390587928	Hv_44K_v2	GTGCAGAACGCTGGCTGTGTATGTATAATTATTTCCTTCCATTAAGTATATCGGTGTGAA	1493	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249063.1	1659	2e-24	1561 - 1620	100	60 / 60	plus	ABC01389 ABC01390 ABC01397
JLOC1	JLOC1_38957.1	1980	8e-25	1709 - 1768	100	60 / 60	plus
Harvest21	ABC01395	1567	3e-25	1477 - 1536	100	60 / 60	plus
Harvest21	ABC01389	1558	3e-25	1473 - 1532	100	60 / 60	plus	ABC01389
Harvest35	U35_14174	1611	3e-25	1494 - 1553	100	60 / 60	plus
Harvest35	U35_14165	719	1e-23	361 - 420	98	59 / 60	minus

Contig Sequence (1611 bp)

>U35_14174 1611 Hv_44K_v2
AAAACCCAACGCCAACGCACGCAGCGCAGGACGACACCACTTTCCACGCCTCCGTCTCCG
CCAGCGACCTCCGCTTCCTCCTCCGGTCGCCGCCGCCTCGCTCCCCAAGACCAATGGCTG
ACGGCGAGGACATCCAGCCACTTGTGTGTGACAATGGGACTGGAATGGTCAAGGCTGGTT
TTGCTGGTGATGATGCCCCAAGAGCAGTTTTCCCTAGTATAGTTGGCCGCCCTCGGCACA
CAGGTGTCATGGTTGGAATGGGCCAAAAAGATGCCTATGTGGGTGATGAAGCGCAGTCAA
AAAGGGGTATCCTGACCTTGAAATACCCTATTGAGCATGGCATTGTGAGCAACTGGGATG
ACATGGAGAAAATCTGGCATCACACCTTCTACAATGAGCTTCGTGTTGCCCCTGAAGAAC
ATCCAGTTTTGCTGACAGAAGCTCCTCTGAACCCAAAGGCAAACAGAGAGAAGATGACCC
AAATCATGTTCGAGACATTCAATGCACCCGCAATGTATGTGGCTATTCAAGCTGTGCTTT
CTCTATATGCCAGTGGTCGTACTACAGGTATTGTGCTTGATTCTGGTGACGGTGTGAGCC
ATACTGTGCCTATCTACGAGGGATATGCACTTCCTCATGCTATTCTCCGGCTGGATCTCG
CGGGTCGTGATCTGACCGACTCCCTAATGAAGATCCTCACGGAAAGGGGCTATTCCTTCA
CTACAACCGCAGAGCGGGAAATTGTAAGAGATATAAAGGAGAAGCTTGCCTATGTCGCCC
TTGACTACGAGCAGGAGCTGGAGACAGCCAAGAGCAGCTCGTCTGTTGAGAAGAGCTATG
AACTGCCTGACGGGCAGGTCATCACGATCGGTGCCGAGAGGTTCAGGTGCCCAGAGGTGC
TGTTCCAGCCCTCGCTGATCGGCATGGAGGCTCCTGGGATCCATGAGACCACCTACAACT
CCATCATGAAGTGCGACGTGGATATCAGGAAGGACCTCTACGGCAACATTGTGCTCAGTG
GAGGGACAACCATGTTCCCCGGCATCGCAGACAGGATGAGCAAGGAGATCACCGCCCTCG
CGCCGAGCAGCATGAAGATCAAGGTCGTGGCGCCTCCCGAGAGGAAATACAGTGTCTGGA
TCGGTGGCTCCATCCTTGCCTCTCTCAGCACATTCCAGCAGATGTGGATATCCAAGGGAG
AGTATGATGAATCTGGCCCCTCGATCGTCCACCGCAAGTGCTTCTAAGCCTTGGGCCGTG
TCTCTGTGCACTTTTCCTATGATTGAGCTTGTATCCGACTCCCCTCCATTGAAGTATTCC
CCGAGCTTTCTGCGGCCGTTTTCACGGATGAAGGAAAAGTAGGTCCTGTATCACTTAATA
CAGAAGATGCCGCTTGTTCTTAGTGATATACTACTATGTTGGTTGATATTTAGCCGGTGC
GTGTGCGACGCACCGGTTTCGGGTTTGGGCTTGGGCTGTTGTGTGGCTGCAGAGTGCAGA
ACGCTGGCTGTGTATGTATAATTATTTCCTTCCATTAAGTATATCGGTGTGAAATTATTG
TTATTATAAAAAAAAAAAAAAAAATGGTTGGCAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_14174 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g61970.1	378	protein\|actin, putative, expressed
Brachypodium v1_2	Bradi1g02580.1	378
Arabidopsis v10	AT5G09810.1	377	\| Symbols: ACT7 \| actin 7 \| chr5:3052809-3054220 FORWARD LENGTH=377