barSeed - Barley Seed Development Database

Probe CUST_38174_PI390587928

Source Contig U35_789

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38174_PI390587928	Hv_44K_v2	TGACGGGAGATGTAACTTTGTGTTCGTCAGACACTTCTCTTTTCAAGTTCGATTATGCTG	852	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_6950.2	814	2e-24	733 - 792	100	60 / 60	plus	ABC02405
MLOC	MLOC_6950.1	1062	2e-24	39 - 98	100	60 / 60	minus	ABC02405 ABC02406 ABC02407 ABC02408 ABC31246
JLOC1	JLOC1_4572.1	980	8e-25	881 - 940	100	60 / 60	plus
Harvest21	ABC02405	934	3e-25	853 - 912	100	60 / 60	plus	ABC02405
Harvest35	U35_789	948	3e-25	853 - 912	100	60 / 60	plus

Contig Sequence (948 bp)

>U35_789 948 Hv_44K_v2
GATACATTAAGATTTTACTATCTTGTTCGATTAGCTACAACTGCGTGAGAGATGGCATCG
AACCAGGACCAACTTAGCTACCGCGCCGGCGAGGCCGAGGGCCGCACCCAGGAGAAGGCT
GGGCAGGTGATGGGCGCGGCCGAGGGCAAGGCCTACGAGGCCAAGGACCGGGTGGCGGCT
CTGGCTGGCCACTCGTCCGGGCATGGCCGGAGCGCCACGGAGGCCACCAAGCACAAGGCC
GGCGAGGCCGGAGACAAGGCGTCCCAGACGGCGCAGGCGACCAAGGACAAGGCTGCCGGC
ACGGCGCAGGCGGCCAAGGACAAGGCGGCCGGGACGGCGCAGGCGGCAAAGGACAAGGCG
GCTGGGACGACGCGGGCCGCCAAGGACCGCACCGTCGAGAGCAAGGAGCAGACCGGCAGC
TTCCTCGGCGAGAAGACGGAGATGGCGAAGCAGAGGGCGGCGGAGGCGGCGGAGGCGGCC
AGGAAGAAGGCGTTGGAGACGGCGCAGTACACGCAGAACAGGACATACGACGCGGCGCAG
TACGCCAAGGAGTCCGCCGTCGCCGGCAAGGACAAGACCGGCAGCGTCCTCCAGCAGGCC
GGCGAGACGGTGGCGAACGCCGTGGTGGGCGCCAAGGACGCCGTGGCCAACACCCTGGGC
ATGGGCGGCGACAACACCAGCACCGCCAAGGACACCACCGCGGAGAAGATCACCAGGGAT
CACTAGATTAGATACACGCGCTCGCGCTTAATTTGCTTTCGTTTCCTTCTCTTGGTACAC
ATTTCACGTTCCAGTTTCATCATCTCCTGACGCACATCTCGTGTCTTGGCCTCTTGGGTC
CGTGTGGATGCCTGACGGGAGATGTAACTTTGTGTTCGTCAGACACTTCTCTTTTCAAGT
TCGATTATGCTGTAATAATAATAATACTCAATACAAAAAAAAAAAAAA

Homology of Contig U35_789 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi2g18090.1	231	1e-61
Arabidopsis v10	None