barSeed - Barley Seed Development Database

Probe CUST_38086_PI390587928

Source Contig U35_22563

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38086_PI390587928	Hv_44K_v2	AAGATGACCAGTAAACAACTTATCTCAAAATCCGGTTTGGATGATAATACGATAGACTTC	668	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369624	1696	7e-23	600 - 659	98	59 / 60	plus	ABC02506 ABC02507 ABC17153 ABC37332
MLOC	MLOC_10561.2	887	3e-21	432 - 491	97	58 / 60	minus	ABC02506 ABC02507 ABC17153
MLOC	MLOC_10561.1	1488	3e-21	1033 - 1092	97	58 / 60	minus	ABC02506 ABC02507 ABC17153 ABC37332
JLOC1	JLOC1_6912.3	905	2e-21	357 - 416	97	58 / 60	plus
JLOC1	JLOC1_6912.2	1497	2e-21	411 - 470	97	58 / 60	plus
Harvest21	ABC17153	732	3e-25	669 - 728	100	60 / 60	plus	ABC17153
Harvest35	U35_22563	732	3e-25	669 - 728	100	60 / 60	plus

Contig Sequence (732 bp)

>U35_22563 732 Hv_44K_v2
AAACCTGCGGCCCGGAAAGCCCCCCTAGACCGATCTTTCTTCGCGGACTTGTCGTTCCTT
CTCCCCGAAGGAGGACTCGAGGCGTCGGAGATCCATCACATCACATCACATCACGCGCGG
ACTTGTCGTTCCTTCTCTTGCTCGCTCATCTCTCAATCGGGACGGAGCAAGATCGACGAT
GGATGTGGAGTACGACGTGATCGTGCTGGGGACGGGGCTCAAGGAGTGCATCCTCAGCGG
CCTCCTCTCCGTCGACCGCCTCAAGGTGCTTCACATGGACAGGAATGACTATTATGGTGG
AGACTCCACATCGCTGAATCTCAACCAGCTGTGGAAAAGGTTCAAGGGTGACGGGACACC
CCCTGCAAATATAGGAGCCAGCAGAGACTACAATGTAGACATGGTTCCAAAGTTTATGAT
GGCAAATGGTGCTTTGGTCCGTGTACTGATTCATACTGGTGTTACCAAGTATTTATCCTT
TAAAGCTGTGGATGGAAGCTACGTTTTCAACAAGGGAAAGATCCACAAAGTCCCCTCTAC
TGATATGGAAGCTCTCAAGTCTCCATTGATGGGATTATTTGAGAAGCGAAGAGCAGGGAA
ATTCTTCCTTTATGTTCAAGATTACAAGGAAAATGATCCAAGTACTCACAAGGGGGCTGG
ACCTTACAAAGATGACCAGTAAACAACTTATCTCAAAATCCGGTTTGGATGATAATACGA
TAGACTTCATTG

Homology of Contig U35_22563 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g16970.2	352	2e-107	protein\|rab GDP dissociation inhibitor alpha, putative, expressed
Brachypodium v1_2	Bradi1g53020.1	447	6e-108
Arabidopsis v10	AT2G44100.1	445	8e-88	\| Symbols: ATGDI1, AT-GDI1, GDI1 \| guanosine nucleotide diphosphate dissociation inhibitor 1 \| chr2:18241804-18244864 FORWARD LENGTH=445