barSeed - Barley Seed Development Database

Probe CUST_37881_PI390587928

Source Contig U35_818

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37881_PI390587928	Hv_44K_v2	GGAAGCTAAGACTTTGATATCACTTGACCTGGTTTCTTGTGAACATGTTTTGAGTTTAAT	455	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364348	2837	2e-24	888 - 947	100	60 / 60	minus	ABC01817 ABC01818 ABC01819 ABC02584 ABC06112 ABC33656 ABC35116 ABC40607 ABC52711
MLOC	MLOC_57475.1	493	2e-24	434 - 493	100	60 / 60	plus	ABC02584 ABC06112 ABC52711
JLOC1	JLOC1_37257.1	986	8e-25	614 - 673	100	60 / 60	plus
Harvest21	ABC52581	251	3e-25	174 - 233	100	60 / 60	plus
Harvest21	ABC02584	531	3e-25	428 - 487	100	60 / 60	plus	ABC02584
Harvest35	U35_818	559	3e-25	456 - 515	100	60 / 60	plus

Contig Sequence (559 bp)

>U35_818 559 Hv_44K_v2
GTCTCACACACCCTTGCGCGGGGGCCGCCGCCGCATCAGTTTCTCTTCGTCCTCCCGCAG
CCTCCCCGAAGAGATCAAAGTCGCTCTTGTGCCACTTCCCCTCCAGCTGCCACCATGCAG
AATGAGGAGGGAGCCATGGTGGACCTCTACGTCCCCAGGAAGTGCTCCGCCACCAACAGG
ATCATCACGGCCAAGGACCATGCCTCTGTCCAGATCAACATTGGTCACGTTGATGAGAAT
GGCCTCTATGATGGCCGCTTCACCACCTTTGCTCTCTCTGGGTTCGTCCGTGCTCAGGGT
GATGCTGATGGCTCCCTGGACAGGCTGTGGCAGAAGAAGAAGGCTGAGGTCAAGCAGCTC
TAAATGTTGCTAGTAGTTTTACCTGGAACTTGTTTCCTTCCCATGTCTACCTAGCTCTTG
GATGTATGTTCTTGGTGTCAGTTCGCTGCTACTATGGAAGCTAAGACTTTGATATCACTT
GACCTGGTTTCTTGTGAACATGTTTTGAGTTTAATATGTGTTGAATGGTTGATAAAAAAA
AAAAAAAAAAAAAAAAAAA

Homology of Contig U35_818 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g62690.2	83	2e-53
Arabidopsis v10	None