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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_37872_PI390587928Hv_44K_v2TACTGTGTGCTTTGTTGGCTCGCACAATGAGATCGCTCGCGGTGGTGATGGCCGTGGTAA38GeneList: None
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.2910.8060.6770.6221.5051.321
Raw 130.10089.68486.68287.051107.284106.256



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_6801.113312e-24322 - 38110060 / 60plus ABC02517 ABC02518 ABC02519
JLOC1JLOC1_4449.112638e-25228 - 28710060 / 60plus
Harvest21ABC0251910233e-2539 - 9810060 / 60plusABC02519
Harvest21ABC0251710262e-2136 - 949757 / 59plusABC02517
Harvest35U35_8236993e-2539 - 9810060 / 60plus
Harvest35U35_82110262e-2136 - 949757 / 59plus



Contig Sequence (699 bp)

>U35_823 699 Hv_44K_v2
ACCACTACGACAGTAGCGTAAGCGTAACACCGAGTACGTACTGTGTGCTTTGTTGGCTCG
CACAATGAGATCGCTCGCGGTGGTGATGGCCGTGGTAACCACGGTGGCCATGGCCATCGG
CACGGCGCGCGGCAGCGTGTCCTCCATCATCTCGCGCGCACAGTTCGACCGCATGTTGCT
GCACCGCAACGACGGCGCCTGCCAGGCCAAGGGCTTCTACACCTACGACGCCTTCGTCGC
CGCCGCATCTGCCTTCCCGGGCTTCGGCAGCACCGGCAGCGCCGACGCCCAGAAGCGCGA
GGTGGCCGCCTTCCTGGCCCAGACCTCCCACGAGACCACCGGCGGATGGGCGACGGCACC
GGACGGGGCCTTCGCCTGGGGCTACTGCTTCAAGCAGGAACGCGGCGCCTCCTCCGACTA
CTGCACCCCGAGCGCACAGTGGCCGTGCGCCCCCGGGAAGCGCTACTACGGCCGCGGGCC
CATCCAGCTCTCCCACAACTACAACTATGGACCTGCCGGCCGGGCCATCGGGGTCGATCT
GCTGGCCAACCCGGACCTGGTGGCCACGGACGCCACTGTGGCGTTTAAGACGGCCATCTG
GTTCTGGATGACGGCGCAGCCGCCCAAGCCGTCGAGCCATGCTGTGATCGCCGGCCAGTG
GAGCCCGTCAGGGGCTGACCGGGCCGCAGGGCGGGTGCC



Homology of Contig U35_823 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os05g33130.13414e-105protein|CHIT17 - Chitinase family protein precursor, expressed
Brachypodium v1_2Bradi1g29880.12537e-122
Arabidopsis v10AT3G12500.13353e-106| Symbols: ATHCHIB, PR3, PR-3, CHI-B, B-CHI, HCHIB | basic chitinase | chr3:3962501-3963984 REVERSE LENGTH=335