barSeed - Barley Seed Development Database

Probe CUST_37866_PI390587928

Source Contig U35_22637

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37866_PI390587928	Hv_44K_v2	TGTTCACGGATGTTTGGTGGACTCGTATATTCACATCAATTCAGTTCATTCACTAAAAAA	673	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371466	1960	3e-22	1903 - 1958	100	56 / 56	plus	ABC15789 ABC18549 ABC19664
JLOC1	JLOC1_13318.9	1405	1e-22	1262 - 1317	100	56 / 56	plus
JLOC1	JLOC1_13318.8	1473	1e-22	1330 - 1385	100	56 / 56	plus
JLOC1	JLOC1_13318.4	1417	1e-22	1274 - 1329	100	56 / 56	plus
JLOC1	JLOC1_13318.3	1478	1e-22	1335 - 1390	100	56 / 56	plus
JLOC1	JLOC1_13318.2	1482	1e-22	1339 - 1394	100	56 / 56	plus
JLOC1	JLOC1_13318.1	1420	1e-22	1277 - 1332	100	56 / 56	plus
Harvest21	ABC19664	577	3e-25	12 - 71	100	60 / 60	minus	ABC19664
Harvest21	ABC37132	382	1e-23	12 - 71	98	59 / 60	minus
Harvest35	U35_22637	744	3e-25	674 - 733	100	60 / 60	plus

Contig Sequence (744 bp)

>U35_22637 744 Hv_44K_v2
TAAGGATTCAGTATGACGACCAGGGCGATTTCGAGCGTGTAGCTCGTCAGTTTGGAGTAT
TTGAAGAGTGGAAGTTTCCCTTGCTAACTCAATTTAATTTGTTTATGTTTCGTTCTCAAG
TATGGCAAGTGATAAATCTCTGAGCGGTGATTCTTTGCTCTATTAGAAAATGCAATTTTG
CTGGACACAATTTGGACTGGAAATGTGTAAAGTCTTCCGGTGCAAACCATTATTGCTCAT
GTTTTAATTTTTCTGCCATTTTTCAAGGACGGTGTTCCACGGGCAGCTTACAAGGGTGTG
GTGGTCTTCCGATATAAGAGCAGTCGAAGACGAATATACCTTGTCGGCCCTGACTCTCTT
CGTCAACTCGGGGTTTAGCTTACGGTGCTGAGTTTTTCCAAAGCTAGACAATGGAAGTCT
TCAAAGAAGATGGTGGAAGTTTCAGTAACAAGAAAATTTGGCATGGATTAGTCACATACA
TATGGGCGTATTTTTAACGGAATTAAACGCTTATACTTACTGGATTTCTAAGCATAGTTA
GCATTTCCGATGTTAAACCACAATTAGCACAGTAAATTTATCCTTGTTGTTGAGTTGTTT
GTGCGACTCAACATGTAGTGCACATGTGTAGTTAGTTCTAGTACATCTGGCAGGTGATTG
GTCATCACTGTTATGTTCACGGATGTTTGGTGGACTCGTATATTCACATCAATTCAGTTC
ATTCACTAAAAAAAAAAAAAAAAA

Homology of Contig U35_22637 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None