barSeed - Barley Seed Development Database

Probe CUST_37609_PI390587928

Source Contig U35_2162

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37609_PI390587928	Hv_44K_v2	TCAGACCCCAGGGAAGAGAACTTGACCTGCTAATTGTAATACTGCCTGACAATAATGGTT	201	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250484.1	3791	2e-24	2427 - 2486	100	60 / 60	plus	ABC06398 ABC19284 ABC38126
MLOC	AK250313.1	3742	2e-24	2397 - 2456	100	60 / 60	plus	ABC06398 ABC19284 ABC38126
MLOC	MLOC_55785.5	1299	2e-24	1016 - 1075	100	60 / 60	minus	ABC06398 ABC19284 ABC38126
MLOC	MLOC_55785.4	1363	2e-24	1081 - 1140	100	60 / 60	minus	ABC06398 ABC19284 ABC38126
MLOC	MLOC_55785.1	1881	2e-24	1353 - 1412	100	60 / 60	minus	ABC06398 ABC19284 ABC38126
MLOC	MLOC_55785.2	1825	2e-24	1288 - 1347	100	60 / 60	minus	ABC06398 ABC19284 ABC38126
MLOC	MLOC_55785.3	1744	2e-24	1220 - 1279	100	60 / 60	minus	ABC06398 ABC19284 ABC38126
JLOC1	JLOC1_36024.1	1654	8e-25	246 - 305	100	60 / 60	plus
Harvest35	U35_2162	909	3e-25	202 - 261	100	60 / 60	plus

Contig Sequence (909 bp)

>U35_2162 909 Hv_44K_v2
GAGTCAGCCACTGGGCATGTATAAACTTCTCTCGGAATGTGCAAGATAGTGCTGCCAGGG
GTTTCTGTCATGAGCTTGCTATAATGTGCCAAATATCTGGAATGGACTTTGCACCTGAAC
CTGTGCTGCCCCCACTTACTGCGAGACCTGAACATGTAGAAAGAGCACTAAAGGCGCGTT
ATCAAGATGCCATGAATATAATCAGACCCCAGGGAAGAGAACTTGACCTGCTAATTGTAA
TACTGCCTGACAATAATGGTTCTCTTTATGGGGATCTCAAAAGGATTTGTGAGACTGATC
TTGGATTGGTATCTCAGTGTTGTCTGACGAAACATGTTTTTAAGATGAGCAAGCAGTATC
TGGCAAATGTAGCTCTTAAGATTAATGTTAAGGTTGGCGGAAGGAATACTGTACTTGTGG
ATGCCTTGACCAGGAGGATTCCCCTTGTCAGTGACAGACCAACAATAATATTTGGTGCTG
ATGTTACACACCCTCATCCTGGAGAAGATTCCAGTCCTTCCATTGCTGCTGTGGTTGCTT
CCCAAGACTGGCCTGAGGTCACTAAGTATGCAGGATTAGTTAGCGCCCAAGCCCATAGGC
AAGAATTGATACAGGATCTTTTTAAAGTATGGCAAGATCCCCAAAGAGGAACTGTGACTG
GTGGCATGATCAAGGAGCTTCTCATTTCTTTCAAGAGGGCAACCGGACAGAAACCCCAGA
GAATCATATTTTACAGGGATGGTGTCAGCGAGGGCCAGTTCTATCAAGTTCTTCTGTATG
AACTTGATGCCATTAGAAAGGCATGTGCGTCCTTGGAGCCCAATTACCAGCCCCCAGTTA
CTTTTGTAGTTGTCCAGAAGCGGCATCACACCAGGCTTTTTGCTAATAACCACAATGATC
AACGTACTG

Homology of Contig U35_2162 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g47870.2	1102	0.0	protein\|PINHEAD, putative, expressed
Brachypodium v1_2	Bradi5g18540.3	1017	0.0
Arabidopsis v10	AT1G48410.2	1050	2e-176	\| Symbols: AGO1 \| Stabilizer of iron transporter SufD / Polynucleotidyl transferase \| chr1:17886285-17891892 REVERSE LENGTH=1050