barSeed - Barley Seed Development Database

Probe CUST_37533_PI390587928

Source Contig U35_38861

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37533_PI390587928	Hv_44K_v2	TTGATTACTCGAATTATGTTTGCTTTCAGTTGCCCATAGCACATGTAGTATTCTCGACAC	26	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363521	3262	2e-24	3182 - 3241	100	60 / 60	plus	ABC11670 ABC18393
MLOC	AK371010	3297	2e-24	2366 - 2425	100	60 / 60	plus	ABC11670 ABC18393
MLOC	MLOC_33660.3	445	2e-24	335 - 394	100	60 / 60	minus	None
MLOC	MLOC_5237.1	259	2e-24	138 - 197	100	60 / 60	plus	None
MLOC	MLOC_27392.1	385	3e-21	88 - 147	97	58 / 60	minus	ABC11670
JLOC1	JLOC1_3365.1	199	8e-25	78 - 137	100	60 / 60	plus
Harvest35	U35_38861	634	3e-25	27 - 86	100	60 / 60	minus

Contig Sequence (634 bp)

>U35_38861 634 Hv_44K_v2
TTTTTTTTTTTTTTTTTAAAATTTATGTGTCGAGAATACTACATGTGCTATGGGCAACTG
AAAGCAAACATAATTCGAGTAATCAACTAACTTGTGATCATCAGGTACCATCTCCCTCGC
CCTACCCGCACAAAATATTGCATAAGCATCAGCTGCATACTTGTCAACACCACAAAGTTG
CATAACATGGGTCCAGGTTGGCACTGCTCATGCTCGCCACGCTGCTGAACCTGATGTAGA
GCACGGATGTCGGGGCCTGCGCGTCCAGCCAGTCGAGGCAGGAGCGGTCCTGCTGAAGGA
GGCTGCTGGACGACGTCGGGGAGCGCTTGTGGAGCGGACCGACGGCGAACACGGGCACGC
CGGCGAGGTCGCGCCGGGTGGCCGTCAGGTCGTCGGCCTCCAGCGCGTCGAAGGGGTTGA
AGACAAATCCTGCAGAGCTTCGCATCGCCTCGACCGCCCGGGACAACAGCTTGCACATTA
GCTCGTGCTCGTGACGGCTGCTGCTGTTGGCGCCCATCAGGTCCCGGACGCGGCACGGCG
GTAGCTCCCTCACCGGCGCGTCCAGCTGCGACTCAGCCCCGCCACGCGCATGAGGGCCAG
CAGGTGCGCGTCGGCGAACAGGCACGTGACCTGG

Homology of Contig U35_38861 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None