barSeed - Barley Seed Development Database

Probe ABC11670

Source Contig ABC11670

barSeed

Links

Affymetrix Source Sequence (1415 bp)

>ABC11670 1415
GATTAAAAAAGCAACGGCAAGAAACCCCGTGTACGTGTCCTCAGCAAGCGTGAGCTTATC
CAGGAGGCAAGAAAGCAGCCAAAGTTGCTGCCCGAAGGCTTTGTGCCCTTCAGCAATTTT
GTTGCCAGTTGCACGGAGCAGAACGCTGACCGACCACCTTACAGTGCATTCTTCGACCAG
TTCCGCTATAACCCTGTCTGCGAAGATCGCAGACCCCCACTTCCCAGAACCCCTGATCGT
GTGGCCAGGTTGCCACCTCGGGGTTACTCATCATTTGAGTCATCTCAGCTTGCTGCAAAT
GAGGCTTCCAGGCCTGACACCACTCTCGCGTCCAAGACAAAGCAGCAAGATTCAGGTTCA
GGATCACAAGAGAAAGTTAGTGTAGAAGTAAAGGAAAACCCTGAAAACAAGACGAGGGAG
AAGAAGCAAAGGAAACTATCTGGCAAGTCACGATTGCCATTTGACCCCAGCCAGACTTGC
TGTGTTCAGCTACAAGGAACCAAAGCTCTACCAGAAGAGGACCAAGAGACCTCCAAGGCT
TTCAAGGCTAACAATTCTGTGGAGTCCAAGTCAAAGAAGGAAGATTCAGCTTCAGGCTCC
ACCTCGGGCTCACAGAAGAAACAAATTGTAAAAGAAAAGACAACCCCTGAGAAGAAGACG
AGGATCAGCAAACGACGACCAGTGTTTACCGCTGCTGAGAAGCGCTCAGACAAATACCGG
CGCGTTCCCTTGGACCAGCTGGTATCACCGCCACGCTCTCCTCATAATCTCTTGCAGGAG
AAGTACGCTTCTGACCCGTGGAAGGTTATTCTCATCTGCGTGTTCCTCAACTTAACACAG
GGTATACAGGTCAAGAGGATGTTGGAGGGCTTCTTTGAACGCTATCCTGACCCTTTGTCT
GCAATTAACGCTGATCCTGACAAGATGGCGGAGTATCTAGCGCCTCTAGGGTTGAACAAT
GTGAGGACACGCAATATCAAGAAATTGTCCAAGCAGTATGTTGGAAATGAATGGACCCAT
GTTACGCAGCTTTGTGGCGTCGGCAAGTATGCAGCTGATGCTTATGCAATATTTTGTGCG
GGTAGGGCGAGGGAGGTGGTACCTGATGATCACAAGTTAGTTGATTACTGGAATTATGTC
TGCTTTGAGTTGCCCATGGCACAGATGGATTAGTTCAGTTCCAGTATATGTTGAGTGAAG
TGCAAGGGGAAGCAGCTGTGGATGGCGGCGCCATGCAGTCCTGGATGGGATAATTTTACA
GTGCAACTGGGGTTGGTTTTGTGTGGTTCATGTACCTTGGATACTTTGCTCCCTTAGATT
AGTGTTAAGCTTGAGATGATATTACCTGACAAAAGACAGTTGATGGATGCAACGAGTTAT
GTTTGCAGTTGTCTTTTTAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_5925.1	3090	0.0	56 - 1456	99	1397 / 1401	CUST_13797_PI390587928 CUST_20669_PI390587928	ABC11670
MLOC_5925.2	3091	0.0	1 - 1390	99	1389 / 1390	CUST_13797_PI390587928 CUST_20669_PI390587928	ABC11670
AK374143	3647	0.0	2298 - 3647	99	1348 / 1350	CUST_13797_PI390587928	ABC11670
MLOC_5925.3	2878	0.0	14 - 1177	99	1163 / 1164	CUST_13797_PI390587928	ABC11670
MLOC_5925.4	2774	0.0	235 - 1088	99	853 / 855	None	ABC11670
AK371010	3297	2e-57	2257 - 2408	93	142 / 152	CUST_37533_PI390587928 CUST_11497_PI390587928	ABC11670 ABC18393
MLOC_65241.1	199	1e-64	1 - 199	89	182 / 204	None	ABC11670
MLOC_32208.1	286	7e-62	99 - 286	90	172 / 192	None	ABC11670
MLOC_41201.1	213	2e-57	59 - 213	93	145 / 156	None	ABC11670
MLOC_27392.1	385	9e-56	105 - 256	93	141 / 152	CUST_37533_PI390587928	ABC11670
AK363521	3262	2e-53	3075 - 3224	92	140 / 152	CUST_37533_PI390587928 CUST_26787_PI390587928	ABC11670 ABC18393
MLOC_25300.1	434	2e-53	270 - 434	90	151 / 168	None	ABC11670