barSeed - Barley Seed Development Database

Probe ABC18393

Source Contig ABC18393

barSeed

Links

Affymetrix Source Sequence (771 bp)

>ABC18393 771
GGCGGCTGGGCGTGCCGACGCTGGTGCTGCGCACCGGCAGCGCCGCCTGCTTCCGCAACT
TCCTGGCCAACCCCGTGCTCTGCGAGAAGGGGTACCTCCCGGTGGGGGCGGAGTCGAAGC
TGGACGCGCCGGTGAGGGAGCTGCCGCTGTACCGCGTCCGGGACCTGATGGGCGCCAACA
GCAGGAGCCGCCACGAGCACGAGCTCATGTGCGAGCTGCTGTCCCGGGCGGTCGAGGCGG
TGCGGAGCTCCGCAGGGTTCGTCCTCAACAGATTCGACGCGCTGGAGGCGGACGACCTGG
CGGCGACCCGGCGCGACCTCGCCGGCGTGCCCGTGTTCGACGTCGGCCCGCTCCACAAGC
TCTCCCCGGCGTCGTCCTGCAGCCTTCTTCAGCAGGACCGCTCCCAGCAAGGGATCGAGT
GAAGAAACTGGATTGGGATCATGGAGTAAATCAAACGAGGATGCAAGTATGCAACTCATG
TTCGTGTAGGTAGTCATTCAGACATTTCTTAACTCTATGGCAAATAGTTCACATGGTAGA
GCCAGCTGTGGTGGAGAGGCTAGATAGTTTTAGTATTCAGACTTTCAGTTGCTGCTAGCT
CTTCTTTGCTCTACCGGAATGGATGTGTTTTTGTCCACATAAAATTCTAACATGAATTTT
CTATTTAGCTAGCAAATTCAATAATTTATGTACCGTATTTGCATTTTGTAGTCATACTTT
CTATTGGAATTTGACTTATAATGGTTTTTACCGTAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK355895	1276	0.0	499 - 902	99	398 / 404	None	ABC18393 ABC34568
AK358998	1487	0.0	503 - 895	97	392 / 404	CUST_6092_PI390587928	ABC18393 ABC34568
AK368466	1258	0.0	874 - 1231	99	356 / 358	CUST_13890_PI390587928 CUST_17503_PI390587928	ABC12083 ABC18393 ABC20951
AK359822	1308	3e-153	1009 - 1308	99	298 / 300	CUST_17503_PI390587928 CUST_13890_PI390587928	ABC12083 ABC18393 ABC20951
MLOC_1194.2	911	1e-146	606 - 911	97	298 / 306	CUST_17503_PI390587928 CUST_13890_PI390587928	ABC12083 ABC18393 ABC20951
MLOC_1193.4	995	1e-146	690 - 995	97	298 / 306	CUST_17503_PI390587928 CUST_13890_PI390587928	ABC12083 ABC18393 ABC20951
MLOC_1193.5	979	2e-134	702 - 979	98	272 / 278	CUST_17503_PI390587928 CUST_13890_PI390587928	ABC12083 ABC18393 ABC20951
AK356932	1444	2e-119	1209 - 1444	99	235 / 236	CUST_17503_PI390587928	ABC12083 ABC18393 ABC20951
AK371010	3297	6e-110	1873 - 2172	91	272 / 300	CUST_37533_PI390587928 CUST_11497_PI390587928	ABC11670 ABC18393
AK363521	3262	2e-104	2691 - 2989	90	269 / 300	CUST_26787_PI390587928 CUST_37533_PI390587928	ABC11670 ABC18393
MLOC_8535.1	442	4e-102	33 - 328	89	268 / 300	None	ABC18393
MLOC_8535.2	829	5e-91	2 - 264	90	237 / 264	None	ABC17805 ABC18393
MLOC_8535.3	1380	3e-88	2 - 256	90	230 / 256	None	ABC18393
MLOC_8535.4	1292	3e-88	2 - 256	90	230 / 256	None	ABC17805 ABC18393
MLOC_56209.1	1610	1e-82	1 - 227	91	213 / 234	None	ABC12083 ABC18393 ABC20951
MLOC_32302.1	322	2e-80	3 - 261	88	228 / 259	None	ABC18393
MLOC_56209.3	1578	8e-79	1 - 220	91	206 / 227	None	ABC12083 ABC18393 ABC20951
MLOC_56209.2	1689	3e-78	1 - 219	91	205 / 226	None	ABC12083 ABC18393 ABC20951
MLOC_34087.1	200	2e-69	4 - 197	91	177 / 194	None	ABC18393
MLOC_34625.1	138	3e-63	1 - 138	99	136 / 138	CUST_13890_PI390587928	ABC12083 ABC18393 ABC20951