barSeed - Barley Seed Development Database

Probe CUST_37335_PI390587928

Source Contig U35_6094

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37335_PI390587928	Hv_44K_v2	CTATGGACTACTCTTACATGGATAATGCGGCAGAATTTGTTAAAGAAAAAAGTGTGACAA	586	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11897.3	1729	7e-23	415 - 474	98	59 / 60	plus	ABC00139 ABC00163 ABC00203 ABC00695 ABC00877 ABC13704 ABC26541 ABC30604 ABC32179 ABC37444
MLOC	MLOC_11897.4	1733	7e-23	415 - 474	98	59 / 60	plus	ABC00139 ABC00163 ABC00203 ABC00695 ABC00877 ABC13704 ABC26541 ABC30604 ABC32179 ABC37444
MLOC	MLOC_11897.2	3330	7e-23	1271 - 1330	98	59 / 60	plus	ABC13704 ABC21141 ABC26541 ABC50975
MLOC	MLOC_11897.1	1920	7e-23	748 - 807	98	59 / 60	plus	ABC13704 ABC21141 ABC26541 ABC50975
JLOC1	JLOC1_7933.6	2108	4e-23	722 - 781	98	59 / 60	plus
JLOC1	JLOC1_7933.3	1977	4e-23	591 - 650	98	59 / 60	plus
JLOC1	JLOC1_7933.2	2519	4e-23	603 - 662	98	59 / 60	plus
Harvest21	ABC12698	655	3e-25	587 - 646	100	60 / 60	plus
Harvest35	U35_6094	655	3e-25	587 - 646	100	60 / 60	plus

Contig Sequence (655 bp)

>U35_6094 655 Hv_44K_v2
TCTGAATAAGAGCAGCAAAAAATGGACAGGAAGAGGGTGGGAATCGTTGGTGCTGGTGTG
AGCGGCCTAGCAGCCTGCAAGCACGCGTTAGACAAGGGGTTCAGCCCGGTGGTATTCGAG
GCCGATGACACCATCGGAGGAGTGTGGGCGCATACCTTGGAGTCAACGAGGCTTCAGGCG
CCAACGACATCGTTCCGGTTCTCGGACCTGGCGTGGCCGGCGGGCGTGACCGCGACGTAC
CCAGGCCACCGTCAAGTCATGGAGTACCTCAGGTTGTATGCACGTGAGTTTGACCTCTTA
AAGTGTATCAAGTTCAATAGCCAGGTGCTTGGAGTTGAATACTTTGGTGCAAACGAGGAA
GAGATTATGGGGTGGGAGCATTGGTCTGGTGATGACGGGAAGGCGTTCAGAGTTGCGAAA
GATAGAGGGTGGAACCTTACAGTGAAGGACCTGAAAAATGGTAACATTGAGGTTTTTCAA
GTGGATTTTCTCATACTGTGCATCGGAAGGCATAGTGGGACCCCAAATATCCCAGAATTT
CCAGCGAATAAAGGGCCTGAGTTCTTCAAGGGCAAAATATTGCACTCTATGGACTACTCT
TACATGGATAATGCGGCAGAATTTGTTAAAGAAAAAAGTGTGACAATAATTGGGT

Homology of Contig U35_6094 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g37620.1	520	1e-121	protein\|flavin-containing monooxygenase family protein, putative, expressed
Brachypodium v1_2	Bradi4g37110.1	520	1e-124
Arabidopsis v10	None