barSeed - Barley Seed Development Database

Probe CUST_37118_PI390587928

Source Contig U35_571

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37118_PI390587928	Hv_44K_v2	TATGTACGTTAGCATTTTGTCATTTTCGCTGTGTTGTGCTGCTTCCGACCAGCATGAGAG	1229	GeneList: royalblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	7.147	4.688	1.086	0.635	0.293	0.263
Raw	177.014	195.431	35.979	38.155	3.962	4.402

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369632	1351	2e-24	1244 - 1303	100	60 / 60	plus	ABC02636 ABC02638 ABC02639 ABC02640 ABC02643 ABC30628 ABC50932
MLOC	MLOC_20101.1	392	2e-24	218 - 277	100	60 / 60	plus	ABC02640 ABC02643
JLOC1	JLOC1_13945.1	440	8e-25	218 - 277	100	60 / 60	plus
Harvest21	ABC02643	421	3e-25	224 - 283	100	60 / 60	plus	ABC02643
Harvest21	ABC02640	807	3e-25	94 - 153	100	60 / 60	minus	ABC02640
Harvest35	U35_571	1432	3e-25	1230 - 1289	100	60 / 60	plus

Contig Sequence (1432 bp)

>U35_571 1432 Hv_44K_v2
ACACACATTCTCTGCTTCTGCTAACCAGCAGCAGCACAAACACACATACAGATTGCGTGA
GTTAGAGTGATCAGATCGAGAGCGATGGCAATTCCAGCTAATGCTGCCGCCACCTCGTTG
AGCTTCCCGGTGATCCACATGGAGAAGCTGGAGACAGAGGAGAGGGGAGCGGCCATGGAG
GTCATCCGCGACGCCTGCGAGAACTGGGGCTTCTTCGAGCTGCTGAACCATGGCATCTCG
CACGAGCTGATGGACGAGGTGGAGCGGGTGAGCAAGGCGCACTACGCGGCGTGCCGGGAG
GAGCAGTTCAAGGAGTTCGCGGCACGGACGCTGGAGGCCGGCGAGAAGGGCGCCGACGTG
AAGGACGTGGACTGGGAGAGCACCTTCTTCGTCCGCCACCTCCCCGCCTCCAACCTCGCC
GACCTGCCCAACCTCGACCACCACTACAGGCAAGTGATGAAGGAGTTCGCGTCCGAGATC
GAGAAGCTTGCGGAAAAGGTGCTGGACCTGCTGTGCGAGAACCTCGGCCTGGAGGAGGGC
TACCTGAAGCGGGCCTTCACCGGCTCCAATGGCGTCCCCACGTTCGGCACCAAGGTCAGC
AGCTACCCGCCGTGCCCGCGCCCGGACCTCGTCAAGGGCCTCCGCGCCCACACCGACGCC
GGCGGCATCATCCTGCTCTTCCAGGACGACCGCGTCGGCGGGCTCCAGCTGCTCAAGGAC
GGCGAGTGGGTGGACGTGCCGCCCACGCGCCACTCCATCGTCGTCAACCTGGGCGACCAG
CTGGAGGTGATCACCAACGGCAGGTACAAGAGCGTGCTCCACCGCGTGGTCGCGCAGACC
GACGGCAACCGGATGTCCATCGCCTCCTTCTACAACCCGGCCAGCGACGCCGTCATCTTC
CCGGCGCCGGCGCTGGCGGAGGCGGCTGGCGGGGCGTACCCCAAGTTCGTGTTCGAGGAC
TACATGAAGCTGTACGTGCGCCACAAGTTCGAGGACAAGGAGCCCAGGTTCGAGGCCTTC
AAGTCCGTGGAGAGGCAGAGCTCCAACCTCATCGCCACCGCCTAATAGCAACAACGACGT
ACTCCCTTGCTCTGCTCTCCGTACGTGGCCTCGGTTATTGGTCGAGAGACGATGACGCAT
TGGATGCTTGAGAGAGTTCGTACGTCTAGTACTGTCTGGTGTCGAATAAACGGGCCTGCT
GGCTGCGTGCTACGTCTAGCTAGCTAGGATATGTACGTTAGCATTTTGTCATTTTCGCTG
TGTTGTGCTGCTTCCGACCAGCATGAGAGCTGTGCTGTAATGTAATGTAATGTAATGTAC
CGTGTCTGTTCTTATTCCTGGGGCAAAAAAAAGGTTGTCTCTTTTAAAAAAAAAAAAAAA
AATCCTTAAAAAAAAAAAAAAAAGCTCTTGACACTAAAAAAAAAAAAAAAAA

Homology of Contig U35_571 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g53180.2	322	6e-180	protein\|1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed
Brachypodium v1_2	Bradi3g57620.1	334	0.0
Arabidopsis v10	AT1G05010.1	323	4e-144	\| Symbols: EFE, ACO4, EAT1 \| ethylene-forming enzyme \| chr1:1431419-1432695 REVERSE LENGTH=323