barSeed - Barley Seed Development Database

Probe CUST_37116_PI390587928

Source Contig U35_572

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37116_PI390587928	Hv_44K_v2	AACACACAGCGAGCGCTTGCAGAGAAGCCATAGAGCAGCAACCTGGGATCAGCTCAAGCA	75	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369632	1351	2e-24	16 - 75	100	60 / 60	plus	ABC02636 ABC02638 ABC02639 ABC02640 ABC02643 ABC30628 ABC50932
MLOC	MLOC_39582.1	609	2e-24	247 - 306	100	60 / 60	minus	None
JLOC1	JLOC1_25816.1	604	8e-25	299 - 358	100	60 / 60	plus
Harvest21	ABC02641	588	5e-23	2 - 57	100	56 / 56	plus
Harvest35	U35_572	695	3e-25	76 - 135	100	60 / 60	plus

Contig Sequence (695 bp)

>U35_572 695 Hv_44K_v2
GCGCCACCGCCGGGCCGGCGACGAGCCTCTATAAATCACGCACCCTCCCCGCTGCATTTT
CACTCACACCACTCAAACACACAGCGAGCGCTTGCAGAGAAGCCATAGAGCAGCAACCTG
GGATCAGCTCAAGCACTGACCAGGCGCCGCAGCGCGAACTCGAGGGCTAGGAATTAATGG
CGCCGGCTTCGTCGTTCCCGATCATCGACATGGGGCTGCTGGCCGGGGGCGGGGAGGAGC
GGCCGGCGGCGATGGACCTGCTGCATGACGCATGCGAGAACTGGGGATTCTTCCAGGTTC
TGGACCACGGCATCTCGACGGAGCTGATGGACGAGGTGGAGAGGATGACCAAGGGGCACT
ACAAGAGGGTGCGCGAGCAGAGGTTCCTCGAGTTCGCGAGCAAGACGCTGGAGGACGGCG
GCGGCAGGGCGGCGGAGAACCTGGACTGGGAGAGCACCTTCTTCGTGCGCCACCTCCCGG
AGCCCAACATCGCCGAGATACCCGACCTCGACGACGAGTACAGGCGGGTGATGAAGCGGT
TCGCGTCGGAGCTGGAGACGCTGGCGGAGCGGCTGCTGGACCTGCTCTGCGAGAACCTCG
GCCTCGAGAAAGGGTACCTCACGCGGGCGTTCCGTGGCTCCAAGGGCGTCCCCACCTTCG
GCACCAAGGTCAGCAGCTACCCGCCGTGCCCGCGC

Homology of Contig U35_572 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g27820.1	323	1e-78	protein\|1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed
Brachypodium v1_2	Bradi4g31820.1	322	5e-87
Arabidopsis v10	None