barSeed - Barley Seed Development Database

Probe CUST_37114_PI390587928

Source Contig U35_573

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37114_PI390587928	Hv_44K_v2	CATGAGCCCCGCTTCGATACAAATGTATCACTCATCCCTGATAAATATATAAAGTATAAT	1236	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_43526.1	1431	2e-24	1262 - 1321	100	60 / 60	plus	ABC02639 ABC02640 ABC02642 ABC45343
JLOC1	JLOC1_28141.1	1436	8e-25	1267 - 1326	100	60 / 60	plus
Harvest21	ABC02642	1306	3e-25	1218 - 1277	100	60 / 60	plus	ABC02642
Harvest35	U35_573	1325	3e-25	1237 - 1296	100	60 / 60	plus

Contig Sequence (1325 bp)

>U35_573 1325 Hv_44K_v2
TGGCTCATCCAGCACCTGCAGATAACAACCATCTCATTGTAGAGAGATCAGATCAGAGCC
TACCTAGCTTCTCAGTTCTCACTCATCTTCGCCCAAGAATTTCACCATGGTTGTCCCGGT
CATCGACTTCTCGAAGCTCGACGGCGCCGAGAGGGCGGAGACGATGGCGCAGATCGCCGA
CGGCTGCGAGAACTGGGGCTTCTTCCAGCTGGTGAACCACGGCATCCCCTTGGAGCTTCT
TGATCGCGTCAAGAAGGTGTGCTCCGAGAGCTACCGCCTGCGGGAGGCCGCGTTCCGGTC
GTCGGAGCCGGTGCAGACACTGGAGAGGCTCGTGGAGGCGGAGCGGCGCGGCGAGGCGGT
GGCGCCGGTGGACGACATGGACTGGGAGGACATCTTCTACCTCCACGACGACAACCAGTG
GCCCTCCGACCCGCCGGCCTTCAAGGAGACCATGCGGGAGTACCGCGCCGAGCTCAAGAA
GCTCGCGGAGCGGGTCATGGAGGCCATGGACGAGAACCTCGGCCTGGACAAGGGCCGCAT
GAAGGCCGCCTTCACCGGCGACGGCCTCCACGCACCATTCTTCGGCACCAAGGTCAGCCA
CTACCCGCCGTGCCCGCGCCCAGACCTCATCACCGGACTCCGCGCGCACACCGACGCCGG
CGGCGTCATCCTGCTGTTCCAGGACGACAAGGTCGGCGGCCTTGAGGTGCTCAAGGATGG
CCAGTGGCTGGACGTGCAGCCGCTCCCCGACGCCATCGTGGTCAACACCGGCGACCAGGT
GGAGGTGCTCAGCAACGGCCGCTACCGCAGCGCTTGGCACCGCGTCCTGCCCATGCGCAA
CGGCAACCGCCGCTCCATCGCGTCCTTCTACAACCCGGCGTTCGAGGCGGCCATCTCGCC
GGCGGTGGGCGAAGGCGGCGCCGCCGCGTACCCGGACTACGTGTTCGGAGATTACATGGA
CGTGTACAACAAGCAGAAGTTCGATGCCAAGGAGCCAAGATTCGAGGCCGTCAAGGCGCC
GAAGTCAGCTTAATAAGCTTATAATCAAGGAGATTAAAAGAAAATTATTTACCTATTAGC
TTGCTTTGTTTTACAATGAAGAAAACTATGTTTTTTTGGAGTTTATTTAGACGCGTAACA
ATGTGATGTGGGGATACTTATGATTGGTTCGGTGTGAAATAATTGGAAAATGAAATACTG
TGGATTTTTCATTGGAAAAAAAAAAAAAAAACTTTACATGAGCCCCGCTTCGATACAAAT
GTATCACTCATCCCTGATAAATATATAAAGTATAATATAGATATTGCCAAAAAAAAAAAA
AAAAA

Homology of Contig U35_573 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g05680.1	309	0.0	protein\|1-aminocyclopropane-1-carboxylate oxidase, putative, expressed
Brachypodium v1_2	Bradi2g35860.1	312	0.0
Arabidopsis v10	AT1G77330.1	307	3e-135	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein \| chr1:29063215-29064447 REVERSE LENGTH=307