barSeed - Barley Seed Development Database

Probe CUST_37113_PI390587928

Source Contig U35_574

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37113_PI390587928	Hv_44K_v2	GGGAGTACATGTGCATCCATTCTTGGGTTCATCATATTCATATATAAGTGCATTTTTGTG	1151	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248278.1	1243	2e-24	1153 - 1212	100	60 / 60	plus	ABC02639 ABC02640 ABC02642 ABC45343
MLOC	MLOC_42401.1	463	2e-24	307 - 366	100	60 / 60	plus	ABC02639 ABC02642 ABC45343
JLOC1	JLOC1_27477.1	496	8e-25	307 - 366	100	60 / 60	plus
Harvest21	ABC02639	1262	3e-25	1140 - 1199	100	60 / 60	plus	ABC02639
Harvest35	U35_574	1288	3e-25	1152 - 1211	100	60 / 60	plus

Contig Sequence (1288 bp)

>U35_574 1288 Hv_44K_v2
AGCTCATCCCATCACCTTACATCCACAAGTTTGCACACAACACCACCCGAGTCTGAAACT
CTGAGAAAGCTCATCGTCGCCAATTCACCATGGTTGTTCCGGTGATCGACTTCTCCAAGC
TCGACGGCGCCGAGAGGGCGGAGACCATGGCGCAGATCGCCGACGGCTGCGAGAACTGGG
GGTTCTTCCAGCTGGTGAACCACGGCATCCCGCTGGAGCTTCTTGACCGCGTCAAGAAGG
TGTGCTCCGAGAGCTACCGCCTCCGCGAGGCGGCGTTCCGGTCGTCGAAGCCGGTGCAGA
CGCTGGAGAGGCTCGTGGAGGCGGAGCGGCGCGGCGAGGCGGTGGCGCCGGTGGACGACA
TGGACTGGGAGGACATCTTCTACCTCCACGACAACAACCAGTGGCCTTCCGATCCTCCGG
CCTTCAAGGAGACCATGCGGGAGTACCGCTCCGAGCTCAAGAAGCTCGCGGAGCGGGTCA
TGGAGGCCATGGACGAGAACCTCGGGCTGGACAAGGGACGCATGAAGGCGGCCTTCACCG
GCGACGGCCTCCACGCGCCATTCTTTGGCACTAAGGTCAGCCACTACCCGCCGTGCCCGC
GCCCGGACCTCATCACCGGGCTCCGCGCCCACACCGACGCCGGCGGCGTCATCCTGCTGT
TCCAGGATGACAAGGTCGGGGGCCTTGAGGTGCTCAAGGATGGCCAGTGGCTGGACGTGC
AGCCGCTCGCCGACGCCATCGTGGTCAACACCGGCGACCAGGTGGAGGTGCTCAGCAACG
GCCGCTACCGCAGCGCTTGGCACCGCGTCCTGCCCATGCGCAACGGCAACCGCCGCTCCA
TCGCCTCCTTCTACAACCCGGCGTTCGAGGCAGCCATCTCGCCGGCGGTGGGCGAAGCCG
GCGCCGCCGAGTACCCGGACTACGTGTTCGGGGATTACATGGACGTGTACAACAAGCAGA
AGTTCGAGGCCAAGGAGCCAAGATTCGAGGCCGTCAAGGCGCCAAAGGCAGCTTAAGATG
AATCAAGGAGATTGAAGAGACGTATTTATTTATTATCTGGATATATACAACCCTTGTACG
GAGTATATTTGATCTAAATATATGGACCATCCCACTAGAAAAATTTCAGTGTTTAGTGAG
ATTGGGACTCCGGGAGTACATGTGCATCCATTCTTGGGTTCATCATATTCATATATAAGT
GCATTTTTGTGATAAAAAAAAAAAAAAAAATAGCGAAAAGATTTGTACTACTCACTACTT
TTTGTGTATGTAAAATGCAATCCTTTGT

Homology of Contig U35_574 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g05680.1	309	0.0	protein\|1-aminocyclopropane-1-carboxylate oxidase, putative, expressed
Brachypodium v1_2	Bradi2g35860.1	312	0.0
Arabidopsis v10	AT1G77330.1	307	7e-134	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein \| chr1:29063215-29064447 REVERSE LENGTH=307