barSeed - Barley Seed Development Database

Probe CUST_36881_PI390587928

Source Contig U35_1347

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36881_PI390587928	Hv_44K_v2	CATATTCTGAAGATCGATTTGTATGACATAACTGTAACATCCATGTTACCTGTATGGTGA	808	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250213.1	1079	2e-24	821 - 880	100	60 / 60	plus	ABC03898 ABC03899 ABC12988
MLOC	MLOC_6915.1	2541	2e-24	1883 - 1942	100	60 / 60	minus	ABC03898 ABC03899
JLOC1	JLOC1_4546.4	865	8e-25	623 - 682	100	60 / 60	plus
Harvest21	ABC03898	934	3e-25	804 - 863	100	60 / 60	plus	ABC03898
Harvest35	U35_1347	937	3e-25	809 - 868	100	60 / 60	plus

Contig Sequence (937 bp)

>U35_1347 937 Hv_44K_v2
CCGCAATCCTCCCGTCGTCTCCACCAAAGCAAAGCAGAGGAGTAGGAATCCCGGTTGAAG
GATGACGACGGCGGCGCGGCCGACGTGGGCGCCGGCCAAGGGCGGGAACGAGCAGGGGGG
CACCCGCATCTTCGGGCCCTCCGGGAAGTACTCCTCCCGCGACCTCGCCGCCCACACCTC
CCTCAAGCCCAGAAAAGAGGGCCAACAAACTCAAGAAGAGGTACAAAAGAGGAATCTCAG
GGACGAACTTGAGGAGCGTGAACGCAAGCACTTCTCATCCAAGGATAAGTCCTATGTTGA
TGAGAGGGACCGGCGAAAAAGTTCGAGCTTGCTCTTAGAAGGTTCAAAACGGGATGAGGA
TAAGATAGTTCCACGTGAAATTGATGCAGACGACTCTGACGTGGAGCTCAAAAGTGATGA
TGAAAGCGACGATGATGATGACGACGATGACACCGAGGCACTAATGGCAGAGCTCGAAAG
AATTAAAAAAGAAAGAGCTGAGGACAGGCTTAGAAAGGAGCGTCAGCAAGCAGAAGAAGA
GGCCAAGATGAAGGAGGCTGAGCTGATGCGAGGAAACCCATTGATTAATATGAATAACTC
TGGCTCCTTCAATGTGAAGAGAAGGTGGGATGATGATGTTGTATTCAAGAACCAAGCTCG
TGGAGAGACTAAGACACCGAAACGGTTCATCAACGACACCATCAGAAGTGATTTCCACCG
CAAGTTTCTGCATAGGTACATGAAATGATGCTGCGGTACACTTTATGTTGCCTGGGCAGT
ATGCATGCTGGAAGAGCCTGTGATGTTTCATATTCTGAAGATCGATTTGTATGACATAAC
TGTAACATCCATGTTACCTGTATGGTGATATGTTTACCTTGTTCCTAAGAGTAAAGAAAA
GAACCCACTGCTTGTGTTTAAAAAAAAAAAAAAAAAA

Homology of Contig U35_1347 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g01700.1	231	9e-91	protein\|CWC15 homolog A, putative, expressed
Brachypodium v1_2	Bradi1g52090.1	230	9e-98
Arabidopsis v10	AT3G13200.1	230	6e-77	\| Symbols: EMB2769 \| Cwf15 / Cwc15 cell cycle control family protein \| chr3:4242239-4243976 FORWARD LENGTH=230