barSeed - Barley Seed Development Database

Probe CUST_36755_PI390587928

Source Contig U35_13569

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36755_PI390587928	Hv_44K_v2	AAGGAGATCTATCGCGGCAAGGTCCTCGTCGGCATGAAGAAGACGCTCGTCTTCTACACC	306	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368567	1545	2e-24	456 - 515	100	60 / 60	plus	ABC09031 ABC09032 ABC09757 ABC24230
MLOC	MLOC_40873.2	522	2e-24	137 - 196	100	60 / 60	plus	ABC09031
MLOC	MLOC_40873.1	588	2e-24	197 - 256	100	60 / 60	plus	ABC09031 ABC09757
MLOC	AK366525	1571	7e-23	438 - 497	98	59 / 60	plus	ABC09031 ABC09032 ABC09757 ABC24230
JLOC1	JLOC1_26689.2	743	8e-25	159 - 218	100	60 / 60	plus
JLOC1	JLOC1_26689.1	575	8e-25	196 - 255	100	60 / 60	plus
Harvest21	ABC24669	454	3e-25	307 - 366	100	60 / 60	plus
Harvest21	ABC19250	812	3e-25	435 - 494	100	60 / 60	plus
Harvest21	ABC51659	329	1e-23	156 - 215	98	59 / 60	plus
Harvest35	U35_13569	455	3e-25	307 - 366	100	60 / 60	plus
Harvest35	U35_23540	812	1e-23	435 - 494	98	59 / 60	plus

Contig Sequence (455 bp)

>U35_13569 455 Hv_44K_v2
CCCCCGGGCTGCAGGCACGAATCCTTCTCCTGCCAAGTGATCACCGACGTCGACCTCAAC
AAGAACGAGCCGTGGGACCTCCCGGGTGAGTGCAGCGGAGTACTACTAGTCTACTCCTCG
ACAAGAGCGTCGTTCTTTGATCTGATTTGCAGCACGCTCATGGCCGGTTCGTGTTTTTCT
GCAGGCCTGGCGAAGATGGGCGAGAAGGAGTGGTTCTTCTTCGTGCACAAGAGCCGGAAG
TACCCGACGGGGACGCGCACCAACCGGGCCACAGAGCGCGGCCACTGGAAGGCGACGGGG
AAGGACAAGGAGATCTATCGCGGCAAGGTCCTCGTCGGCATGAAGAAGACGCTCGTCTTC
TACACCGGCCGCGCCCCCAGCGGCGGGAAGACGCCGTGGGTGATGCACGAATACCGCCTC
GAGGGCCAGCTGCCCCATCGCCTCCCCCCCACCGC

Homology of Contig U35_13569 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None