barSeed - Barley Seed Development Database

Probe CUST_36549_PI390587928

Source Contig U35_43654

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36549_PI390587928	Hv_44K_v2	TCTCTGTCTCTCGTATAACAGAGGATCATGATCAAGGTGGCGGCACCGGAGGTGCAGCAG	54	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58764.4	2493	7e-23	57 - 116	98	59 / 60	plus	ABC04676 ABC04677 ABC15844
MLOC	MLOC_58764.5	2096	7e-23	1875 - 1934	98	59 / 60	minus	ABC04674 ABC04676 ABC04677 ABC15844
MLOC	MLOC_58764.6	1965	7e-23	1756 - 1815	98	59 / 60	minus	ABC04674 ABC04676 ABC04677
MLOC	MLOC_58764.2	2246	7e-23	2139 - 2198	98	59 / 60	minus	ABC04676 ABC04677
MLOC	MLOC_58764.1	2571	7e-23	2486 - 2545	98	59 / 60	minus	ABC04676 ABC04677
JLOC1	JLOC1_38205.2	2213	4e-23	139 - 198	98	59 / 60	plus
Harvest21	ABC40572	387	3e-25	55 - 114	100	60 / 60	plus
Harvest35	U35_43654	387	3e-25	55 - 114	100	60 / 60	plus

Contig Sequence (387 bp)

>U35_43654 387 Hv_44K_v2
GGCACCAGGTTAAAATAACCATACAGGCTCTGCTCCTTGGCCATTCCGGGGAGCTCTCTG
TCTCTCGTATAACAGAGGATCATGATCAAGGTGGCGGCACCGGAGGTGCAGCAGCCGCAG
GCTGTCGCCGCCGACGCGGTCTCGGCGGTGGTGCCGGAGGAGACGATCTTCCGGTCCAAG
CTTCCGGACATCGACATCCCGAACCACCTGCCCCTGCACGAGTACTGCTTCGCCAAGGCG
GCCGAGGTCCCGGACGCGCCGTGCCTCATCGCCGCGGCCACGGGGAGGACCTACACGTTC
GCCGAGACGCATGCGCTCTGCCGCAAGGCCGCCGCTGCGCTGCACCGCCTCGGCGTCGGC
CACGGCGACCGCGTCATGATCCTGCTG

Homology of Contig U35_43654 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None